Hi guys.

Recently, I get interest in FHIR in order to run for the IRIS for Health FHIR
contest
. As a beginner on this topic, I've heard somewhat about it, but I didn't know how complex and powerful was FHIR. As pointed out by @Henrique.GonçalvesDias here, you can model several aspects of the patient history and other related entities.

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Continuing the description of work on the use of the openhl python module in productive mode.

Since the version of iris with Embedded Python, does not yet have a final release, it is already necessary to use it in production now. We decided to back up the service for exporting requests to a xlsx file on a separate server, and save the query result in a global in a separate database.

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I recently published the "appmsw-docbook" module for deploying the solution not by individual programs, but by the entire database. This solution allows you to deploy a project without source codes.

Having received feedback, I decided to improve it significantly. Replaced zip archive with tgz, which will allow not using external system-dependent archivers.

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Hi Developers!

Recently we published on Docker Hub images for InterSystems IRIS Community Edition and InterSystems IRIS Community for Health containers.

What is that?

There is a repository that publishes it, and in fact, it is the same container IRIS Community Edition containers you have on official InterSystems listing which have the pre-loaded ObjectScript Package Manager (ZPM) client.

So if you run this container with IRIS CE or IRIC CE for Health you can immediately start using ZPM and install packages from Community Registry or any others.

What does this mean for you?

It means, that anyone can deploy any of your InterSystems ObjectScript application in 3 commands:

  • run IRIS container;
  • open terminal;
  • install your application as ZPM package.

It is safe, fast and cross-platform.

It's really handy if you want to test a new interesting ZPM package and not harm any of your systems.

Suppose, you have docker-desktop installed. You can run the image, which wiil pull the latest container if you don't have it locally:

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We return with our example of using the FHIR Adapter, in this article we are going to review how we can configure it in our IRIS instances and what the result of the installation is.

The steps taken to configure the project are the same as indicated in the official documentation, you can review them directly here. Well, let's get to work!

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Google has one intersting tool named Data Studio. This tool allows creating some interactive dashboards, based on your data, available from the internet. It already offers hundreds of connectors to any sort of data developed by the community. As well as some amount of community developed visualizing. And most importantly, Google offers a way to develop your own connector to your data.

FHIRaaS provides a REST API, and it's available from the internet. So I've decided to try to create some basic report on data stored there. And in the end, I got this.

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InterSystems FAQ rubric

Using the Config.Configuration class and SYS.Database class methods, you can create and register a namespace database from the terminal.

Below is a series of execution examples that create database file /CacheDB/AAA/cache.dat and register database AAA and namespace AAA in the configuration file (cache.cpf).
* Execute in the %SYS namespace. *

* Make sure that this script runs as the user that is used for all IRIS processes to ensure that the directory has appropriate ownership and permissions *

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InterSystems FAQ rubric

To resolve the error <PROTECT>, remove the read-only attribute of the system-wide library database (IRISLIB for InterSystems IRIS, CACHELIB for Caché/Ensemble/HealthShare (Caché-based))

Once you have finished importing the routine, remember to change it back to read-only.

[Version 2013.1 and above]
[Management Portal] > [System Administration] > [Configuration] > [System Configuration] > [Local Database] Uncheck "Mount read-only" from the database name link.

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InterSystems FAQ rubric

ObjectScript allows you to pass any number of arguments using arrays. Do it by adding ... after the argument name.

An example is as follows. In the example statement, the argument information is set in a global variable (a variable stored in the database) so that it can be easily checked after the method is executed.

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Article
· Feb 5, 2023 2m read
COS Url Shortener

Hi Community!

I want to share with you mi first Open Exchange application.

It's a tool to made our developments easier. It's a micro service in a IRIS docker that help us in our new features giving us a way to add short links in our SMS, Email campaigns and for links of the different stores for our apps.

It's very easy to use it.

Simply clone this repo:

https://github.com/daniel-aguilar-garcia/cos-url-shortener.git

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Background

Most websites have a "Fav.ico" file that sets what the icon is for the webpage. Most users have multiple environments, Dev/Test/Live. Often it can be difficult at a glance to see which environment you are in at a time. Wouldn't it be nice to visually see what version you are in? In this example all the instances are called the same and are named "ENSEMBLE". Note that this is certainly IRIS FOR HEALTH as is used on 2022.1

The default Icon is IR

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In part I of this article, we have already learned more about HL7, its messages, structure, segments, and fields. In this part II, we will show you how to transform proprietary/custom data into HL7 using IRIS for Health. For our sample, we used the data generated by the SYNTHEA bulk data generation project (https://synthea.mitre.org/downloads). So, we will show you how to convert 1000 patients from a CSV file to HL7 v2, using the Interoperability features of IRIS for Health.

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When creating custom Business Hosts, it's often necessary to add properties to the class for additional settings that will be used in the initialization or operation of the host. The property name itself isn't always very descriptive, so it's an advantage to have a custom caption display with the field.

In Caché, it was fairly straightforward:

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image

Hi Community,

In this article I will demonstrate the functionality of my app iris-energy-isodata .
Application is accessing energy data (production, demand and supply) from the major Independent System Operators (ISOs) in the United States to ensure sustainable consumption and production patterns (SDG's 12)

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Methods written in ObjectScript can use pass-by-reference arguments to return information to the caller. Python doesn’t support pass-by-reference arguments, so Embedded Python in IRIS doesn’t support them either. That's it, that's the end of the post, hope you liked it. 😉 But wait, what about the Classic Rock & Roll?

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Article
· Nov 27, 2023 2m read
Generative AI for image creation

Currently, many digital artists use generative AI technology as a support to accelerate the delivery of their work. Nowadays it is possible to generate a corresponding image from a text sentence. There are several market solutions for this, including some available to be used through APIs. See some at this link: https://www.analyticsvidhya.com/blog/2023/08/ai-image-generators/.

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InstallFoundation method is missing (IRIS 2023.2+)

Recently IRIS 2023.2 was released. This version removed this method InstallFoundation from this class HS.HC.Util.Installer. This was a private method and it was not documented. But it was widely used by the community to install FHIR server.

So if you encounter this error:

<METHOD DOES NOT EXIST> *InstallFoundation,HS.HC.Util.Installer

While build a demo our your own FHIR server, you can fix it by replacing this line:

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My team is working on redesigning an Interoperability solution that currently runs on a HealthShare server that is part of a mirror. Most of the messages are delimited records processed using Complex Record Mapping. We were told to utilize cloud services available in AWS, use containers, autoscaling…

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Article
· Jul 7, 2023 8m read
Iris FHIR Python Strategy

Description

With InterSystems IRIS FHIR Server you can build a Strategy to customize the behavior of the server (see documentation for more details).

Image

This repository contains a Python Strategy that can be used as a starting point to build your own Strategy in python.

This demo strategy provides the following features:

  • Update the capability statement to remove the Account resource
  • Simulate a consent management system to allow or not access to the Observation resource
    • If the User has sufficient rights, the Observation resource is returned
    • Otherwise, the Observation resource is not returned
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I have challenged to create a bot application using Azure Bot that can retrieve and post data to IRIS for Health.

A patient's data has already been registered in the FHIR repository of IRIS for Health.

The patient's MRN is 1001. His name is Taro Yamada. (in Japanese :山田 太郎)

This bot can post new pulse oximeter readings as an observation resource linked to the patient.

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Article
· Nov 20, 2023 3m read
Parquet files and InterSystems IRIS

In the world of Big Data, selecting the right file format is crucial for efficient data storage, processing, and analysis. With the massive amount of data generated every day, choosing the appropriate format can greatly impact the speed, cost, and accuracy of data processing tasks. There are several file formats available, each with its own set of advantages and disadvantages, making the decision of which one to use complex. Some of the popular Big Data file formats include CSV, JSON, Avro, ORC, and Parquet.

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InterSystems FAQ rubric

You can set individual error pages for the following Web Gateway error messages/system responses:

  • server error
  • server busy
  • server unavailable
  • server timeout
  • connection closed

Settings are made on the Web Gateway Management screen ([Management Portal] > [System Administration] > [Configuration] > [Web Gateway Management] > [Configuration] > [Default Parameters]).

In the Error Page section of the Default Parameters menu, set the filename of the html page to display or the URL to redirect to when an error occurs.

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Article
· Jun 8, 2023 1m read
How to write SELECT ... FOR UPDATE

InterSystems FAQ rubric

Since SELECT ... FOR UPDATE is implemented in many RDBMS as a method of explicit row lock acquisition, I think there are many cases where this function is used.

This syntax is not an error for InterSystems products, but it does not acquire row locks as expected.

This article will show you how to achieve equivalent functionality.

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