#InterSystems IRIS for Health

In part I of this article, we have already learned more about HL7, its messages, structure, segments, and fields. In this part II, we will show you how to transform proprietary/custom data into HL7 using IRIS for Health. For our sample, we used the data generated by the SYNTHEA bulk data generation project (https://synthea.mitre.org/downloads). So, we will show you how to convert 1000 patients from a CSV file to HL7 v2, using the Interoperability features of IRIS for Health.

For a long time, we have been using a utility in production to export the result of a query to an Excel spreadsheet. Moreover, we have applied a modification of it, in which the explicit setting of column formats is a priority.

I participated in InterSystems Women’s Health FHIR contest, because I loved the challenge to learn a new-to-me technology. I wanted to develop an app that receives data from a mobile device like my Fitbit or a Smart Watch. I did not get access to such data except when I downloaded a spreadsheet (CSV file) showing my daily steps and sleep data. I saw in iris-fhir-template it imported some patient data to a FHIR server.

Processing FHIR resources with FHIR SQL BUILDER to predict the probability of developing hepatitis C disease

With the development of technology, the medical industry is also constantly advancing, and humans often pay more attention to their own health,
By learning and processing datasets through computers, diseases can be predicted.

Pre condition: Ability to use FHIR and ML
Firstly, our dataset is obtained from kaggle and transformed into FHIR resources based on patient gender, age, ALP or ALT, and imported into the FHIR resource repository

Hi Developers!

Another way to start using InterSystems ObjectScript Package Manager is to use prebuilt container images of InterSystems IRIS Community Edition and InterSystems IRIS for Health Community Edition.

We deploy this IRIS images on DockerHub and you can run it with the following command:

docker run --rm -p 52773:52773 --init --name my-iris -d intersystemsdc/iris-community:2019.4.0.383.0-zpm

Launch a terminal with:

docker exec -it my-iris iris session IRIS

And install zpm-module as:

USER>zpm 

zpm: USER>install objectscript-math

[objectscript-math] Reload START

[objectscript-math] Reload SUCCESS

[objectscript-math] Module object refreshed.

[objectscript-math] Validate START

[objectscript-math] Validate SUCCESS

[objectscript-math] Compile START

[objectscript-math] Compile SUCCESS

[objectscript-math] Activate START

[objectscript-math] Configure START

[objectscript-math] Configure SUCCESS

[objectscript-math] Activate SUCCESS

zpm: USER>

And use same commands for InterSystems IRIS for Health using the tag: intersystemsdc/irishealth-community:2019.4.0.383.0-zpm

The images are being published on IRIS Community Edition and IRIS Community Edition for Health repositories of Docker Hub.

We will update tags with every new release of IRIS and ZPM.

Happy coding!

Setting up Management Portal Help Pages for Full WebServers

On each page of the System Management Portal, there is a “Help” button. This takes users to an article in documentation that describes the page functionality and use.

Caché provides local documentation for all of these articles.

InterSystems IRIS does not provide local documentation. Instead, the Help button will redirect users to the articles in the online documentation at docs.intersystems.com.

InterSystems FAQ rubric

Countermeasures against SQL injection have been published on various websites, but we believe that it is possible to prevent SQL injection in applications using InterSystems SQL as well as other RDBMS by implementing these countermeasures appropriately. In addition, InterSystems Data Platform (hereinafter referred to as IRIS) incorporates several measures that make SQL injection more difficult than general RDBMS.

In the past, reading information from a bar code was limited to a simple alphanumeric code. The creation of a bar code with more than one dimension (2D), especially the QR Code, allowed to increase the amount and variety of data stored in a bar code. While conventional bar codes are capable of storing a maximum of approximately 20 digits, the QR Code is capable of handling several tens to hundreds of times more information. This revolutionized the markets. Now QR codes are everywhere and can be very useful for storing textual, numeric, alphanumeric and even binary data.

Would you like to be sure your data transforms work as expected with a single command? And what about writing unit tests for your data transforms in a quick and simple way?

When talking about interoperability, there are usually a lot of data transforms involved. Those data transforms are used to convert data between different systems or applications in your code, so they are running a very important job.

Motivation

The motivation behind the InterLang project is rooted in the innovative integration of LangChain chatbot agents with the Fast Healthcare Interoperability Resources (FHIR) framework to revolutionize conversational social prescriptions in healthcare. This project aims to leverage the rich and standardized data available through FHIR, an emerging standard in healthcare data exchange, to inform and empower these advanced chatbot agents.

InterSystems FAQ rubric

This error occurs when an instance of the class is already open at compile time.

There are two ways to deal with this issue:

1. Terminate the process or application that has the instance open
2. Compile options in the studio build menu: Check the compile flag “Compile classes in use” and compile.

If you want to determine which process is using the class, try the sample routine below.

InterSystems FAQ rubric

Being interoperable is more and more important nowadays. InterSystems IRIS 2022.1 comes with a new messaging API to communicate with event streaming platforms like Kafka, AWS SQS/SNS, JMS and RabbitMQ.

This article shows how you can connect to Kafka and AWS SQS easily.
We start with a brief discussion of the basic concepts and terms of event streaming platforms.

InterSystems FAQ rubric

Using the Config.Configuration class and SYS.Database class methods, you can create and register a namespace database from the terminal.

Below is a series of execution examples that create database file /CacheDB/AAA/cache.dat and register database AAA and namespace AAA in the configuration file (cache.cpf).
* Execute in the %SYS namespace. *

* Make sure that this script runs as the user that is used for all IRIS processes to ensure that the directory has appropriate ownership and permissions *