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#InterSystems IRIS for Health

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InterSystems IRIS for Health™ is the world’s first and only data platform engineered specifically for the rapid development of healthcare applications to manage the world’s most critical data. It includes powerful out-of-the-box features: transaction processing and analytics, an extensible healthcare data model, FHIR-based solution development, support for healthcare interoperability standards, and more. All enabling developers to realize value and build breakthrough applications, fast. Learn more.

Hi Community,


In this article, I will introduce Python Flask Web Framework. Together we will create a minimal web application to connect to IRIS and get data from it.

Below you can find the steps we will need to follow:

  • Step 1 : Introduction to Python Flask Web Framework
  • Step 2 : Installation of Flask module
  • Step 3 : Creation of web application using Flask
  • Step 4 : Use of HTML Templates
  • Step 5 : Installation of IRIS Python Native module
  • Step 6 : Establishment of a connection with IRIS
  • Step 7 : Transferring data from IRIS to Flask and displaying it

So Let's start with step 1

Step1-Introduction to Python Flask Web Framework

Flask is a small and lightweight Python web framework that provides useful tools and features that make creating web applications in Python easier. It gives developers flexibility and is a more accessible framework for new developers since it allows to build a web application quickly using only a single Python file. Flask is also extensible and doesn’t requires a particular directory structure or complicated boilerplate code before getting started.


For more details please view Flask Documentations

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Hi Community,

This article is a continuation of my article about Getting to know Python Flask Web Framework

In this article, we will cover the basics of topics listed below:

1. Routing in Flask Framework
2. Folder structure for a Flask app (Static and Template)
3. Getting and displaying data in the Flask application from IRIS.

So, let's begin.

Open Exchange app
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Keywords: Deep Learning, Grad-CAM, X-Ray, Covid-19, HealthShare, IRIS

Purpose

Over the Easter Weekend I touched on some deep learning classifier for Covid-19 Lungs. The demo result seems fine, seemingly matching some academic research publications around that time on this topic. But is it really "fine "?

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Article
· Aug 22, 2020 2m read
An overview of iris-fhir-portal

I created the iris-fhir-portal as part of the current contest InterSystems IRIS for Health FHIR, and I'm writing this quick overview to introduce the features that my application offers.

The goal of iris-fhir-portal is to show how easy we can create a Patient Chart using FHIR capabilities in IRIS for Health and empower the user with their own data.

Open Exchange app
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A common need for our customers is to configure both HealthShare HealthConnect and IRIS in high availability mode.

It's common for other integration engines on the market to be advertised as having "high availability" configurations, but that's not really true. In general, these solutions work with external databases and therefore, if these are not configured in high availability, when a database crash occurs or the connection to it is lost, the entire integration tool it becomes unusable.

Open Exchange app
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¡Hi everybody!

As you likely are aware, the new version of InterSystems IRIS for Health (I4H) it's already available in Docker Hub. It's the Community version and is free and fully functional. There have been comments about it in other articles and posts,... so today I won't add anything about features. Here I want to explore "the mistery about the disappearance, or better, absence of our persistent data when we run a container with the durable option" (I didn't find a terrifying font to emphasize the thriller... post editor is not terrific for styling smiley ) .

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A More Industrial-Looking Global Storage Scheme

In the first article in this series, we looked at the entity–attribute–value (EAV) model in relational databases, and took a look at the pros and cons of storing those entities, attributes and values in tables. We learned that, despite the benefits of this approach in terms of flexibility, there are some real disadvantages, in particular a basic mismatch between the logical structure of the data and its physical storage, which causes various difficulties.

Open Exchange app
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Article
· Aug 26, 2020 3m read
Updating Patient Resource using fhir.js

Hi Community,

I shared my experience working with FHIR for the first time in this article.

In that article, I wrote how I explored the FHIR Resources and talked about the information that I found useful in FHIR documentation.

The first version of my app only shows the information that FHIR Resource provides.

I wanted to make the user able to update the patient details, so I to search for an example of how to do it.

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Hi Developers!

Many of you are looking for samples on how to work with InterSystems IRIS Analytics, formerly known as DeepSee.

There is a Samples BI module with Patients and Holefoods examples which is available on Github with source code. The installation steps are clear but take time.

Recently we added the option to run IRIS Community Edition containers with ObjectScript Package Manager (ZPM) on board. This simplifies the installation to the "run-one-command" step for the modules submitted to ZPM Community Registry. And thus we can benefit the Samples BI installation with ZPM.

And here is how you can run it on your laptop. Let's go!

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In this article I will demonstrate the following :

  • Update ReferencesRange(OBX:7) against ObservationIdentifier(OBX:3.1)[TestCode] from database by using custom utility function
  • Update Abnormal Flag(OBX:8) against ObservationIdentifier(OBX:3.1)[TestCode] and ObservationValue(OBX:5)[Result] from database utility function
  • Route Message based on Abnormal Flag(OBX:8)

Below is the primary and transformed HL7 2.5 ORU_R01 message:

Open Exchange app
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InterSystems FAQ rubric

You can use the system routine ^DBSIZE to estimate the backup file size (see also Note 1).

^DBSIZE estimates the file size of full, cumulative, and differential backups of the databases selected in the database backup list.

The database backup list is created from [System Administration] > [Configuration] > [Database Backup] > [Database Backup List] in the Management Portal.

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The fhir-react project is a React UI framework based on Google Material Design, which covers almost all FHIR resources for versions DSTU2, STU3 and R4.

It design it's really friendly - there's just one component! As FHIR resource types are standards, the framework resolves internally what rendering class must be used.

To display your FHIR resource just write this component:

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I've been working for 19 years in the technology field, and on this journey, I was able to be part of several projects on numerous fronts; however, the health area is one of the areas that attract me the most.

So whenever we get a chance to create something focused on health, using the FHIR protocol is exciting.

But, a team of 3 IT guys with a tech background would not be enough to deliver something really useful, and for a topic as important as women's health, we brought to the team someone who really understands the subject.

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Article
· Feb 5 2m read
COS Url Shortener

Hi Community!

I want to share with you mi first Open Exchange application.

It's a tool to made our developments easier. It's a micro service in a IRIS docker that help us in our new features giving us a way to add short links in our SMS, Email campaigns and for links of the different stores for our apps.

It's very easy to use it.

Simply clone this repo:

https://github.com/daniel-aguilar-garcia/cos-url-shortener.git

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I was searching for the most simple way to connect from visual studio code to my local instance via terminal without having to change any window.

I know this can also be achieved via telnet but seems a bit overhead if you're in your local machine.

For me the simplest sollution is to open a terminal window in VS Code, navigate to the /bin folder of your instance installation and run .\csession.exe INSTANCENAME

For simplicity you can just include your /bin folder in your path so you don't even need to navigate there

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Background

Most websites have a "Fav.ico" file that sets what the icon is for the webpage. Most users have multiple environments, Dev/Test/Live. Often it can be difficult at a glance to see which environment you are in at a time. Wouldn't it be nice to visually see what version you are in? In this example all the instances are called the same and are named "ENSEMBLE". Note that this is certainly IRIS FOR HEALTH as is used on 2022.1

The default Icon is IR

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Article
· Jun 30, 2020 3m read
Replicating Audit Log Near Real Time
Many organisations implement centralised log management systems to separate and centralise the log data in order to e.g. automate threat detection (and response) and to comply with regulatory requirements. The primary systems of interest are the various user facing applications, but increasingly also other kinds of systems including integration platforms.
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