New post

#Docker

7

Docker is a software technology providing containers, promoted by the company Docker, Inc. Docker provides an additional layer of abstraction and automation of operating-system-level virtualization on Windows and Linux.

Introducing Smart Clinical Sidechick — the intelligent, no-drama partner your EHR wishes it could be. She reads FHIR data in real time, interprets lab results without ghosting, and explains clinical alerts like she actually cares. Built with GPT-4 brains and YAML sass, she’s not here to replace your main EHR—just to make it look bad. Tired of irrelevant alerts and cryptic warnings? Sidechick serves up real, explainable insights, not vague “elevated risk” vibes. And when your backend crashes, she doesn’t panic—she self-heals.

0 0
0 11

The 2024.1.4 and 2023.1.6 maintenance releases of InterSystems IRIS® data platform, InterSystems IRIS® for HealthTM, and HealthShare® Health Connect are now Generally Available (GA).

3 0
0 53

Who hasn't been developing a beautiful example using a Docker IRIS image and had the image generation process fail in the Dockerfile because the license under which the image was created doesn't contain certain privileges?

In my case, what I was deploying in Docker is a small application that uses the Vector data type. With the Community version, this isn't a problem because it already includes Vector Search and vector storage. However, when I changed the IRIS image to a conventional IRIS (the latest-cd), I found that when I built the image, including the classes it had generated, it returned this error:

9 2
1 75

I am brand new to using AI. I downloaded some medical visit progress notes from my Patient Portal. I extracted text from PDF files. I found a YouTube video that showed how to extract metadata using an OpenAI query / prompt such as this one:

ollama-ai-iris/data/prompts/medical_progress_notes_prompt.txt at main · oliverwilms/ollama-ai-iris

0 0
0 34

I cloned iris-rag-demo from Open Exchange and issued docker-compose up -d. I went to the front end and type in the chat message:

Who was the 46th President of United States of America?

I got a run time error:

RuntimeError: ERROR <Ens>ErrBPTerminated: Terminating BP ChatProcess # due to error: ERROR #5002: ObjectScript error: <PYTHON EXCEPTION> *<class 'RuntimeError'>: <PYTHON EXCEPTION> <class 'ValueError' > ERROR #5002: ObjectScript error: <PYTHON EXCEPTION> *<class 'RuntimeError'

Traceback:

0 0
0 19

I know that people who are completely new to VS Code, Git, Docker, FHIR, and other tools can sometimes struggle with setting up the environment. So I decided to write an article that walks through the entire setup process step by step to make it easier to get started.

I’d really appreciate it if you could leave a comment at the end - let me know if the instructions were clear, if anything was missing, or if there’s anything else you'd find helpful.

The setup includes:

✅ VS Code – Code editor
✅ Git – Version control system
✅ Docker – Runs an instance of IRIS for Health Community
✅ VS Code REST Client Extension – For running FHIR API queries
✅ Python – For writing FHIR-based scripts
✅ Jupyter Notebooks – For AI and FHIR assignments

Before you begin: Ensure you have administrator privileges on your system.

In addition to reading the guide, you can also follow the steps in the videos:

For Windows

https://www.youtube.com/embed/IyvuHbxCwCY
[This is an embedded link, but you cannot view embedded content directly on the site because you have declined the cookies necessary to access it. To view embedded content, you would need to accept all cookies in your Cookies Settings]

6 2
2 143

Background

Embeddings is a new IRIS feature empowering the latest capability in AI semantic search.
This presents as a new kind of column on a table that holds vector data.
The embedding column supports search for another existing column of the same table.
As records are added or updated to the table, the supported column is passed through an AI model and the semantic signature is returned.
This signature information is stored as the vector for future search comparison.

2 0
1 41

Hello,

i am building a new container with Docker-Compose with a --volume ./:/irisdev/app:rw to mount a host volume (UBUNTU).

If i try to create some data in /irisdev/app i have no write permission

If i open a bash host session i see all mounted files of my ./ directory. But with ls -l only UID 100 has write permission. The UID for "iris owner" is 52773.

Is there a way to set the UID and Group to "iris owner" ?

regards Matthias

0 1
0 42

In this article I'll show you how to set up in your laptop, very quickly, a cluster of IRIS nodes in sharding. It's not the goal of this article neither to talk about sharding in detail nor define a deployment of a production ready architecture, but to show how to set up quickly, in your own machine, a cluster of IRIS instances configured as shard nodes, with which you'll able to play and test this functionality. If you're insterested in knowing more about sharding in IRIS, take a look at the documentation clicking here.

First and foremost, I want to remark that IRIS sharding will allow us 2 things:

  • Define, load and query shard tables, which data will be distributed transparently between the cluster's nodes
  • Define federated tables, which offer a global and composed view of data belonging to different tables that will be physically stored in different distributed nodes

So, as I said, we let for other article playing with shard or federated tables, and just focus now in the previous step, that is, setting up the cluster of shard nodes.

7 1
1 80

Introduction

Since InterSystems has recently announced the discontinuation of support for InterSystems Studio starting from version 2023.2 in favor of exclusive development of extensions for the Visual Studio Code (VSC) IDE, believing that the latter offers a superior experience compared to Studio, many of us developers have switched or are beginning to use VSC. Many may have wondered how to open the Terminal to perform operations, as VSC does not have an Output panel like Studio did, nor an integrated feature to open the IRIS terminal, except by downloading the plugins developed by InterSystems.

21 8
12 1.9K

Hello,

When setting up a new web app in iris (iris is in a container) iris complains that a WSGI framework is not installed. I have installed python into the container as well as both flask and django via the python virtual environment (see second screenshot) and the python language server is running

Is this the wrong way to install flask? How do I get the container version to recoginize that flask is installed?

0 2
0 56

Hi, I'm trying to use the iris python package to create a connection to and Iris Health instance (Docker Container), but getting and error. I can login to the instance using the UI with the same uname/password but unable to create the python connection. Any suggestions?

conn = iris.connect("testserver",52222,"%SYS","username","password")

After executing this I get an exception trap
An error occurred: Invalid Message Count: expected: 1 got: 825110831

0 1
0 72

I have started working on utilizing Epic on FHIR about a month ago.

Creating a Public Private Key Pair

mkdir /home/ec2-user/path_to_key
openssl genrsa -out ./path_to_key/privatekey.pem 2048

For backend apps, you can export the public key to a base64 encoded X.509 certificate named publickey509.pem using this command...

Open Exchange app
5 2
2 245

Monitor incremental changes in the database through scheduled tasks, display change trends through charts, set alarm thresholds, and write information to messages.log

How to use it

You can install it through Docker or ZPM

Deploying with Docker Prerequisites

Make sure you have git and Docker desktop installed.

Open Exchange app
3 0
0 118

Hello,

The title says it all. I’m building an IRIS image with docker-compose using a separate Dockerfile. Pretty straightforward procedure: I import a Installer script inside the container containing a Installer Manifest I defined. Within the manifest, I create a namespace with code and data databases in separate locations. My intention is to keep the code database inside the container, so whenever I build the container, the imported code is replaced. The data, however, should be persistent.

2 6
0 436

At hackathons that InterSystems participated and I supported, many students were asking how all their teammates could use the same IRIS database that they spun up in a container. I suggested using ngrok to expose their localhost IRIS and realized we don't have documentation on that. Hence, I thought this would be great to let more people knwo about this powerful technique for enhancing collaboration during development and testing.

4 0
0 36

iris-docker-multi-stage-script

A python script to keep your docker iris images in shape ;)

Witout changing your dockerfile or your code you can reduce the size of your image by 50% or more !

TL;DR

Name the builder image builder and the final image final and add this to end of your Dockerfile:

Modify your Dockerfile to use a multi-stage build:

ARG IMAGE=intersystemsdc/irishealth-community:latest
FROM $IMAGE as builder

Add this to end of your Dockerfile:

FROM $IMAGE as final

ADD --chown=${ISC_PACKAGE_MGRUSER}:${ISC_PACKAGE_IRISGROUP} https://github.com/grongierisc/iris-docker-multi-stage-script/releases/latest/download/copy-data.py /irisdev/app/copy-data.py

RUN --mount=type=bind,source=/,target=/builder/root,from=builder \
    cp -f /builder/root/usr/irissys/iris.cpf /usr/irissys/iris.cpf && \
    python3 /irisdev/app/copy-data.py -c /usr/irissys/iris.cpf -d /builder/root/

Boom! You're done!

18 11
9 841