In this GitHub we gather information from a csv, use a DataTransformation to make it into a FHIR object and then, save that information to a FHIR server all that using only Python.

The objective is to show how easy it is to manipulate data into the output we want, here a FHIR Bundle, in the IRIS full Python framework.

3 3
0 463

The objective of the article is to provide the reader with the following informations:

  • Configure and use the FHIR server
  • Create an OAuth2 Authorization Server
  • Bind the FHIR server to the OAuth2 Authorization Server for support of SMART on FHIR
  • Use the interoperability capabilities of IRIS for Health to filter FHIR resources
  • Create a custom operation on the FHIR server

Schema of the article:

Schema

8 3
6 237

I am happy to share with you my first experience of using a docker container version of IRIS for Health to explore your interest in using or having a trial by taking the advantage of a docker container that is lightweight, and easy to deploy. This cookbook will go through the implementation steps using the GitHub repository called ENSDEMO written by Renan Lourenco.

3 3
0 321

InterSystems FAQ rubric

To resolve the error <PROTECT>, remove the read-only attribute of the system-wide library database (IRISLIB for InterSystems IRIS, CACHELIB for Caché/Ensemble/HealthShare (Caché-based))

Once you have finished importing the routine, remember to change it back to read-only.

[Version 2013.1 and above]
[Management Portal] > [System Administration] > [Configuration] > [System Configuration] > [Local Database] Uncheck "Mount read-only" from the database name link.

4 3
0 275
Article
· Dec 7, 2020 6m read
IRIS Python Native API in AWS Lambda

If you are looking for a slick way to integrate your IRIS solution in the Amazon Web Services ecosystem, server less application, or boto3 powered python script, using the IRIS Python Native API could be the way to go. You don't have to build out to far with a production implementation until you'll need to reach out and get something or set something in IRIS to make your application do its awesome sauce, so hopefully you will find value in this article and build something that matters or doesn't matter at all to anybody else but you as that is equally important.

image

7 2
1 747

When you first start working with InterSystems IRIS, it’s a common practice to install a system with only a minimum level of security. You have to enter passwords fewer times and this makes it easier to work with development services and web applications when you're first getting acquainted. And, sometimes, minimal security is more convenient for deploying a developed project or solution.
And yet there comes a moment when you need to move your project out of development, into an Internet environment that’s very likely hostile, and it needs to be tested with the maximum security settings (that is, completely locked down) before being deployed to production. And that’s what we’ll discuss in this article.
For more complete coverage of DBMS security issues in InterSystems Caché, Ensemble, and IRIS, you may want to read my other article, Recommendations on installing the InterSystems Caché DBMS for a production environment.
The security system in InterSystems IRIS is based on the concept of applying different security settings for different categories: users, roles, services, resources, privileges, and applications.

Users can be assigned roles. Users and roles can have privileges on resources — databases, services, and applications — with varying read, write, and use rights. Users and roles can also have SQL privileges on the SQL tables located in databases.

5 2
2 911

Over the last couple of weeks the Solution Architecture team has been working to finish off our 2019 workload: this included open-sourcing the Readmission Demo that was brought to HIMSS last year, so we could make it available to anyone looking for an interactive-way of exploring the tooling provided by IRIS.

11 2
1 1.2K

Hi developers! have you ever implemented a DICOM integration? Maybe you have searched for an example, or even a simulator. Here you can find a example that may be useful.

DICOM is a message standard widely used in healthcare for diagnostic images.You can use DICOM standard in interoperability productions using both IRIS For Health and Health Connect, here you can find the documentation.

10 2
2 500

image

Hi Community,

In this article I will demonstrate the functionality of my app iris-energy-isodata .
Application is accessing energy data (production, demand and supply) from the major Independent System Operators (ISOs) in the United States to ensure sustainable consumption and production patterns (SDG's 12)

3 2
0 264

InstallFoundation method is missing (IRIS 2023.2+)

Recently IRIS 2023.2 was released. This version removed this method InstallFoundation from this class HS.HC.Util.Installer. This was a private method and it was not documented. But it was widely used by the community to install FHIR server.

So if you encounter this error:

<METHOD DOES NOT EXIST> *InstallFoundation,HS.HC.Util.Installer

While build a demo our your own FHIR server, you can fix it by replacing this line:

5 2
1 254

Hi Community,

This post is a introduction of my open exchange iris-fhir-client application.

iris-fhir-client can connect to any open FHIR Server by using embedded python with the help of fhirpy Library.
Get Resource information by terminal and by using CSP web application.

6 2
0 642

InterSystems FAQ rubric

You can programmatically retrieve routine dates and sizes using the RoutineList query of the %Library.Routine (or just %Routine) class.

The RoutineList query has an argument, and the routine name to be searched can be specified by prefix match or middle match. (For wildcards, specify * or ?)

In the example below, *.MAC is specified as an argument.

5 2
0 417
Article
· Nov 20, 2023 3m read
Parquet files and InterSystems IRIS

In the world of Big Data, selecting the right file format is crucial for efficient data storage, processing, and analysis. With the massive amount of data generated every day, choosing the appropriate format can greatly impact the speed, cost, and accuracy of data processing tasks. There are several file formats available, each with its own set of advantages and disadvantages, making the decision of which one to use complex. Some of the popular Big Data file formats include CSV, JSON, Avro, ORC, and Parquet.

3 2
1 242
Article
· Jun 30, 2020 3m read
Replicating Audit Log Near Real Time
Many organisations implement centralised log management systems to separate and centralise the log data in order to e.g. automate threat detection (and response) and to comply with regulatory requirements. The primary systems of interest are the various user facing applications, but increasingly also other kinds of systems including integration platforms.
1 2
2 365

A simple production that enables FHIR transaction bundles to be loaded into InterSystems® FHIR® Server via Box and Dropbox. Using the included MFT Connection Components and a 14 liner Custom Business Process, this production will process your transaction bundles to FHIR Resources for immediate consumption with Harry Potter like wizardry. Great for Hackathons, Research and FHIR® Cocktail parties.

7 2
0 435

Background

In 2021, I participated as an InterSystems mentor in a hackathon, where a newcomer to FHIR asked me if there was a tool to transform generic JSON data containing basic patient information into FHIR format. I informed her that I didn't know anything like that, unfortunately.

But that idea stays in my mind...

Several months later, in 2022, I came up with an idea to experiment: to train a named entity recognition (NER) to identify FHIR elements into generic texts. The training involved synthetic FHIR data generated by Synthea and the spaCy Python library.

3 2
0 136

In the past, reading information from a bar code was limited to a simple alphanumeric code. The creation of a bar code with more than one dimension (2D), especially the QR Code, allowed to increase the amount and variety of data stored in a bar code. While conventional bar codes are capable of storing a maximum of approximately 20 digits, the QR Code is capable of handling several tens to hundreds of times more information. This revolutionized the markets. Now QR codes are everywhere and can be very useful for storing textual, numeric, alphanumeric and even binary data.

4 2
3 1.2K

Healthcare interoperability is instrumental in improving patient care, decreasing healthcare provider costs, and providing a more accurate picture to providers. However, with so many different systems, data is formatted in many different ways. There are many standards that have been created to try to solve this problem, including HL7v2, HL7v3, and CDA but each one has its drawbacks.

12 2
1 2.1K
Article
· Feb 24, 2023 2m read
InterSystems IRIS in Containers

InterSystems has also released IRIS as containerized deployments. This post is to demonstrate how InterSystems IRIS and applications those rely on IRIS a backend can be packaged into an image and be run in other machines in containers and how simple it is to do that.

A container runs image/s which have all the necessary executables, binary code, libraries, and configuration files. And the images can be moved from one machine to another, and an images repository like Docker Hub can simplify that process.

I have used an application from Open Exchange for this demo.

5 2
3 352

InterSystems FAQ rubric

The meaning of each timeout value is as follows.

1. [Server response timeout]

If IRIS/Caché processing (routine or query execution) does not finish within this set time, the browser will return an error.

For example, if this value is 60 seconds and it takes 90 seconds to execute a routine/method/query, an error will occur.

2. [Queued request timeout]

5 2
0 310
Article
· Oct 23, 2019 2m read
Unit Tests for Data Transforms

Would you like to be sure your data transforms work as expected with a single command? And what about writing unit tests for your data transforms in a quick and simple way?

When talking about interoperability, there are usually a lot of data transforms involved. Those data transforms are used to convert data between different systems or applications in your code, so they are running a very important job.

4 2
1 677

I've been working for some days in the connectivity between NodeJS client applications and IRIS as server using web sockets.

You can get all the information in relation to the web socket connections using IRIS as a client or as a server from this URL: https://docs.intersystems.com/irislatest/csp/docbook/DocBook.UI.Page.cls...

3 2
0 305

I have attached a document that describes the product I have developed called NiPaRobotica Pharmacy. This is an interface I developed that accepts Pharmacy Dispense Requests and converts the line items on the order into dispense dialogues which it sends to pharmacy robots. I deployed the interface into 3 Hospital pharmacies two of which had 6 robots that were arranged in such a way that the dispense chutes channelled medications to desks by the pharmacists sitting in windows serving 1200 patients a day. The robots cut the average waiting time from 2 hours down to one hour.

17 2
1 369

Released with no formal announcement in IRIS preview release 2019.4 is the /api/monitor service exposing IRIS metrics in Prometheus format. Big news for anyone wanting to use IRIS metrics as part of their monitoring and alerting solution. The API is a component of the new IRIS System Alerting and Monitoring (SAM) solution that will be released in an upcoming version of IRIS.

11 2
7 1.8K