InterSystems IRIS for Health ENSDEMO

Yet another basic setup of ENSDEMO content into InterSystems IRIS for Health.

Make sure you have Docker up and running before starting.

Setup

Clone the repository to your desired directory

git clone https://github.com/OneLastTry/irishealth-ensdemo.git

Once the repository is cloned, execute:

Always make sure you are inside the main directory to execute docker-compose commands.

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What is Web Scraping:

In simple terms, Web scraping, web harvesting, or web data extraction is an automated process of collecting large data(unstructured) from websites. The user can extract all the data on particular sites or the specific data as per the requirement. The data collected can be stored in a structured format for further analysis.

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The following steps show you how to display a sample list of metrics available from the /api/monitor service.

In the last post, I gave an overview of the service that exposes IRIS metrics in Prometheus format. The post shows how to set up and run IRIS preview release 2019.4 in a container and then list the metrics.


This post assumes you have Docker installed. If not, go and do that now for your platform :)

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Article
· Oct 11, 2022 2m read
ZPM Simple Implementation Cookbook

ZPM is designed to work with applications and modules for InterSystems IRIS Data Platform. It consists of two components, the ZPN Client which is a CLI to manage modules, and The Registry which is a database of modules and meta-information. We can use ZPM to search, install, upgrade, remove and publish modules. With ZPM you can install ObjectScript classes, Frontend applications, Interoperability productions, IRIS BI solutions, IRIS Datasets or any files such as Embedded Python wheels.

Today this cookbook will go through 3 sections:

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Article
· Jul 8, 2020 7m read
Tips for debugging with %Status

Introduction

If you're solving complex problems in ObjectScript, you probably have a lot of code that works with %Status values. If you have interacted with persistent classes from an object perspective (%Save, %OpenId, etc.), you have almost certainly seen them. A %Status provides a wrapper around a localizable error message in InterSystems' platforms. An OK status ($$$OK) is just equal to 1, whereas a bad status ($$$ERROR(errorcode,arguments...)) is represented as a 0 followed by a space followed by a $ListBuild list with structured information about the error. $System.Status (see class reference) provides several handy APIs for working with %Status values; the class reference is helpful and I won't bother duplicating it here. There have been a few other useful articles/questions on the topic as well (see links at the end). My focus in this article will be on a few debugging tricks techniques rather than coding best practices (again, if you're looking for those, see links at the end).

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Article
· Apr 9, 2019 3m read
IRIS/Ensemble as an ETL

IRIS and Ensemble are designed to act as an ESB/EAI. This mean they are build to process lots of small messages.

But some times, in real life we have to use them as ETL. The down side is not that they can't do so, but it can take a long time to process millions of row at once.

To improve performance, I have created a new SQLOutboundAdaptor who only works with JDBC.

BatchSqlOutboundAdapter

Extend EnsLib.SQL.OutboundAdapter to add batch batch and fetch support on JDBC connection.

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Updated Jan 19th, 2023.

Hi all,

I want to share a quick little method you can use to enable ssl with a self signed certificate on your local development instance of IRIS/HealthShare. This enables you to test https-specific features such as OAuth without a huge lift.

1. Install OpenSSL

Windows     : Download from https://www.openssl.org or other built OpenSSL Binary. 

Debian Linux: $ sudo apt-get -y install openssl

RHEL        : $ sudo yum install openssl
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Article
· Nov 23, 2020 1m read
Iris key uploader

Introduction

This is iris-key-uploader a frontend in Angular with it's rest API.

The aim of this project is to easily import key file to Iris from a web ui.

Why this project

Unfortunatly the IRIS panel to change key doesn't give the opportunity to upload the license.

Panel

As you can see, you can only browse from the server side.

What if, you don't have a direct access to it ?

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Article
· Mar 3, 2021 4m read
Access to IRIS from Rust

What do you think If I will say you, that very soon you will be able to connect to IRIS from the application written in Rust.

What is Rust

Rust is a multi-paradigm programming language designed for performance and safety, especially safe concurrency. Rust is syntactically similar to C++, but can guarantee memory safety by using a borrow checker to validate references. Rust achieves memory safety without garbage collection, and reference counting is optional. (c) Wikipedia

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I am demonstrating a use case of how we can create an IRIS Interoperability Production for special use in an external language. InterSystems IRIS, within Interoperability has a framework called Production Extension (PEX), using which we can create productions and program them as per their purpose using external languages like Java, Python etc, and also develop custom inbound and outbound adapters to communicate with other applications.

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InterSystems and Intel recently conducted a series of benchmarks combining InterSystems IRIS with 2nd Generation Intel® Xeon® Scalable Processors, also known as “Cascade Lake”, and Intel® Optane™ DC Persistent Memory (DCPMM). The goals of these benchmarks are to demonstrate the performance and scalability capabilities of InterSystems IRIS with Intel’s latest server technologies in various workload settings and server configurations. Along with various benchmark results, three different use-cases of Intel DCPMM with InterSystems IRIS are provided in this report.

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Article
· Aug 22, 2020 2m read
My experience working with FHIR

Hi Community,

I want to share my experience creating the iris-fhir-portal with FHIR.

I decided to take a step forward and join the IRIS for Health FHIR contest, but I had never worked with FHIR before.

After the FHIR Contest Kick-Off Webinar, where we got an overview of how the IRIS for Health works with FHIR, I started to looking at the FHIR documentation to create my Patient Chart project.

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Hi guys.

Recently, I get interest in FHIR in order to run for the IRIS for Health FHIR
contest
. As a beginner on this topic, I've heard somewhat about it, but I didn't know how complex and powerful was FHIR. As pointed out by @Henrique Dias here, you can model several aspects of the patient history and other related entities.

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Hi folks!

Recently I was in need to setup a local FHIR server using IRIS For Health and I think I found the easiest and simplest way ever.

Just run in terminal these two lines below :

docker run --rm --name my-iris -d --publish 9091:1972 --publish 9092:52773 intersystemsdc/irishealth-community

and

docker exec -it my-iris iris session iris -U "USER" '##class(%ZPM.PackageManager).Shell("install fhir-server")'

And you'll have FHIR server running locally at http://localhost:9092/fhir/r4.

That's it!

The FHIR server will use the latest build of InterSystems IRIS for Health Community Edition and will deploy FHIR server from this app via IPM package in FHIRSERVER namespace.

This is for Mac, so please add in comments how it works in Windows.

This is a very short article as it is really easy to setup a local FHIR server with InterSystems IRIS for Health and IPM Package Manager.

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Hi Developers,

Python has a large and powerful ecosystem that contains thousands of libraries and packages available, especially in data science.

Therefore, I wanted to have a first try in using a recent feature of IRIS called Embedded Python, to simply import a python library called datetime, generate data with a timestamp component and persist it in InterSystems IRIS for Health Data Platform. The same will work on IRIS Data Platform as well.

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I'm always on the lookout for tools that make the development and testing of my interfaces more efficient. A couple of years ago I came across HL7 Spy, from Inner Harbour Software. It quickly became my go-to tool for running message comparison reports for interface engine migrations, message statistics gathering, and troubleshooting message receipt and delivery. It also offered enhanced functionality for things like fetching messages via sftp that other tools don't provide.

I've recently been working with HL7 Spy's author, Jon Reis, to enable support for fetching messages directly from the Ensemble message store. Its SQL Loader feature now has native Caché/IRIS support, and I've contributed a small server-side class to support the extraction of messages using it.

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Motivation

The motivation behind the InterLang project is rooted in the innovative integration of LangChain chatbot agents with the Fast Healthcare Interoperability Resources (FHIR) framework to revolutionize conversational social prescriptions in healthcare. This project aims to leverage the rich and standardized data available through FHIR, an emerging standard in healthcare data exchange, to inform and empower these advanced chatbot agents.

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Currently, many digital artists use generative AI technology as a support to accelerate the delivery of their work. Nowadays it is possible to generate a corresponding image from a text sentence. There are several market solutions for this, including some available to be used through APIs. See some at this link: https://www.analyticsvidhya.com/blog/2023/08/ai-image-generators/.

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In this article I will demonstrate the following :

  • Update ReferencesRange(OBX:7) against ObservationIdentifier(OBX:3.1)[TestCode] from database by using custom utility function
  • Update Abnormal Flag(OBX:8) against ObservationIdentifier(OBX:3.1)[TestCode] and ObservationValue(OBX:5)[Result] from database utility function
  • Route Message based on Abnormal Flag(OBX:8)

Below is the primary and transformed HL7 2.5 ORU_R01 message:

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