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Whats NLP Stands For?

NLP stands for Natural Language Processing which is a field of Artificial Intelligence with a lot of complexity and
techniques to in short words "understand what are you talking about".

And FHIR is...???

FHIR stands for Fast Healthcare Interoperability Resources and is a standard to data structures for healthcare. There are
some good articles here explainig better how FHIR interact with Intersystems IRIS.

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Article
Robert Cemper · Jul 4, 2020 2m read
Terminal Multi-Line Command Editor

 

This is a coding example working on Caché 2018.1.3 and IRIS 2020.2 
It will not be kept in synch with new versions 
It is also NOT serviced by InterSystems Support !


The Command extension enables the execution of Multi-Line Commands from Terminal prompt.

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While reviewing our documentation for our ^pButtons (in IRIS renamed as ^SystemPerformance) performance monitoring utility, a customer told me: "I understand all of this, but I wish it could be simpler… easier to define profiles, manage them etc.".

After this session I thought it would be a nice exercise to try and provide some easier human interface for this.

The first step in this was to wrap a class-based API to the existing pButtons routine.

I was also able to add some more "features" like showing what profiles are currently running, their time remaining to run, previously running processes and more.

The next step was to add on top of this API, a REST API class.

With this artifact (a pButtons REST API) in hand, one can go ahead and build a modern UI on top of that.

For example -

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Article
Daniel Kutac · May 15, 2020 3m read
Debugging in HealthShare

Hi, if you develop production with HealthShare, you may have noticed there is a nice tracing feature available - HS.Util.Trace.Operations. This feature allows visually tracing debug information, in structured way. It complements good old logging macros like $$$LOGINFO, $$$TRACE and alike.

I use this feature a lot. However, it has limited functionality, it works nice with classes that extend XML Adapter, streams or data types, but it doesn't work well with arbitrary objects that do no extend from XML Adapter.

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Keywords: Deep Learning, Grad-CAM, X-Ray, Covid-19, HealthShare, IRIS

Purpose

Over the Easter Weekend I touched on some deep learning classifier for Covid-19 Lungs.  The demo result seems fine, seemingly matching some academic research publications around that time on this topic. But is it really "fine "? 

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Keywords: COVID-19, Medical Imaging, Deep Learning, PACS Viewer, and HealthShare.

 

Purpose

We are all gripped by this unprecedented Covid-19 pandemic. While supporting our customers in battlefields by any means, we also observed various fighting fronts against Covid-19 by leveraging today's AI powers. 

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Now the Classes/Rutines/DeepSee files will be automatically exported to the working directory after saving or compiling and files will be automatically deleted .

Installation

To install isc-dev , you just need to download and import the file isc-dev.xml from last release.
Some ways to import isc-dev .xml file:

  • Go to Management Portal -> System Explorer -> Classes -> Import and select the XML file.
  • Drag the file over Studio.
  • Terminal command:
NS>do $system.OBJ.Load("yourpath/isc-dev.xml","ck")
NS>zpm
zpm: NS>install isc-dev

How to enable this feature:

  • After importing the class in the target namespace, run the following method to set up the working directory:
NS>do ##class(dev.code).workdir("/path/to/your/working/directory/src/")
  • Go to Management Portal -> System Administration -> Configuration -> Additional Settings -> Source Control.
  • Select the target namespace and set the dev.FileManExtension class as the main one and save it.
  • Try to create a new class in the studio and save/compile it
  • Enjoy!
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GraphQL is a standard for declaring data structures and methods of data access that serves as a middleware layer between the client and the server. If you’ve never heard about GraphQL, here is a couple of useful online resources: here, here and here.

In this article, I will tell you how you can use GraphQL in your projects based on InterSystems technologies.

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InterSystems and Intel recently conducted a series of benchmarks combining InterSystems IRIS with 2nd Generation Intel® Xeon® Scalable Processors, also known as “Cascade Lake”, and Intel® Optane™ DC Persistent Memory (DCPMM). The goals of these benchmarks are to demonstrate the performance and scalability capabilities of InterSystems IRIS with Intel’s latest server technologies in various workload settings and server configurations. Along with various benchmark results, three different use-cases of Intel DCPMM with InterSystems IRIS are provided in this report.

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I was searching for the most simple way to connect from visual studio code to my local instance via terminal without having to change any window.

I know this can also be achieved via telnet but seems a bit overhead if you're in your local machine.

For me the simplest sollution is to open a terminal window in VS Code, navigate to the /bin folder of your instance installation and run .\csession.exe INSTANCENAME

For simplicity you can just include your /bin folder in your path so you don't even need to navigate there

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1. Purpose

This is a 10-minute simple step-by-step guide on how to quickly set up various flavors of HealthShare docker containers from scratch on a Win10 laptop. 

For example, we can build a couple of  HealthShare "global edition vs UK Edition" demos as shown below.  

There are a couple of frequently asked questions from HealthShare colleagues and partners:

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Article
Jeffrey Drumm · Jul 25, 2019 1m read
Disabling an Ensemble Production

I'm not saying that this is in anyway "best practices," but I'm in a peculiar situation where I need to restrict users from starting a "retired" Ensemble Production in a namespace that's been renamed. It's still an "Ensemble-activated" namespace; we need to keep it available for Ensemble Message Viewer access ... fortunately, only for a little while.

It's a bit of a hack ...

Open the Production class in Studio and add the following classmethod:

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Hello!

This article is a small overview of a tool that helps to understand classes and their structure inside the InterSystems products: from IRIS to Caché, Ensemble, HealthShare.

In short, it visualizes a class or an entire package, shows the relations between classes and provides all the possible information to developers and team leads without making them go to Studio and examine the code there.

If you are learning InterSystems products, reviewing projects a lot or just interested in something new in InterSystems Technology solutions — you are more than welcome to read the overview of ObjectScript Class Explorer!

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This is more for my memory that anything else but I thought I'd share it because it often comes up in comments, but is not in the InterSystems documentation. 

There is a wonderful utility called ^REDEBUG that increases the level of logging going into mgr\cconsole.log. 

You activate it by

a) start terminal/login

b) zn "%SYS"

c) do ^REDEBUG

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Keywords:   Jupyter Notebook, Tensorflow GPU, Keras, Deep Learning, MLP,  and HealthShare    

 

1. Purpose and Objectives

In  previous"Part I" we have set up a deep learning demo environment. In this "Part II" we will test what we could do with it.

Many people at my age had started with the classic MLP (Multi-Layer Perceptron) model. It is intuitive hence conceptually easier to start with.

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Keywords:  Anaconda, Jupyter Notebook, Tensorflow GPU, Deep Learning,  Python 3 and HealthShare    

1. Purpose and Objectives

This "Part I" is a quick record on how to set up a "simple" but popular deep learning demo environment step-by-step with a Python 3 binding to a HealthShare 2017.2.1 instance .  I used a Win10 laptop at hand, but the approach works the same on MacOS and Linux.

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There are often questions surrounding the ideal Apache HTTPD Web Server configuration for HealthShare.  The contents of this article will outline the initial recommended web server configuration for any HealthShare product. 

As a starting point, Apache HTTPD version 2.4.x (64-bit) is recommended.  Earlier versions such as 2.2.x are available, however version 2.2 is not recommended for performance and scalability of HealthShare.

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I already talked about GraphQL and the ways of using it in this article. Now I am going to tell you about the tasks I was facing and the results that I managed to achieve in the process of implementing GraphQL for InterSystems platforms.

What this article is about

  • Generation of an AST for a GraphQL request and its validation
  • Generation of documentation
  • Generation of a response in the JSON format
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For Global Summit 2016, I set out to showcase a Reference Architecture I had been working on for a National Provider Directory solution with State Level Instances and a National Instance all running HealthShare Provider Directory and all running on AWS Infrastructure.

In short, I wanted to highlight:

  • The implementation of Amazon Web Services to provision the infrastructure, including the auto-creation of the state level instances through Cloud Formation.
  • The use of the HSPD Broadcast functionality to Notify Upstream Systems Changes in Master Provider Data.
  • The implementation of a transformation of the standard Broadcast Object to HL7 MFN for interoperability.
  • The principals of Master Data Management applied to the Provider Directory.

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1. Scope and Objective:

 

Recently we supported a few NHS cases that required TIE (Trust Integration Engine) integration with the PKB service.   Hence this article is meant to be a 10-minute quick guide to describe a demo solution (simple configurations and end-2-end implementation steps) for Health Connect (Ensemble) Integration with PKB (Patient-Knows-Best) service.

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HealthShare HealthConnect and Information Exchange version 15.03 support import transformations from C-CDA 2.1 to SDA. You can find these transforms in your installation's csp/xslt/SDA3 directory. For general information about import transforms, see "CDA Documents and XSL Transforms in HealthShare" in Overview of Health Connect.

Among the enhancements to import functionality added in connection with C-CDA 2.1 support is the ability to preprocess your C-CDA input files prior to the transformation done for import.

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I wanted to share a little tidbit which is in the Studio documentation (http://docs.intersystems.com/cache20152/csp/docbook/DocBook.UI.Page.cls?...) but many people who have been using the InterSystems Studio for a long time missed the addition of this *very* useful feature, and every time I mention this to an audience  I see at least one face light up because of how excited they are to learn about it!

Within Studio, the Output pane (View -> Output) is actually misnamed.  It is actually an Input/Output window which can be used to run Caché ObjectScript commands!  

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I needed to pass through a file with Ensemble but the operation wasn't writing some filenames as given because the  EnsLib.File.PassthroughOperation 'sanitizes' filenames removing characters that are not valid on some operating
systems;
09000655_AEDC_C3344059_A/E_Martin Browne_09000655_201706221018.pdf
09000655_AEDC_C3344059_A#47E_Martin_Browne_09000655_201706221018.pdf

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