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#Python

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Python is an interpreted high-level programming language for general-purpose programming. Created by Guido van Rossum and first released in 1991, Python has a design philosophy that emphasizes code readability, notably using significant whitespace

Official site.

InterSystems Python Binding Documentation.

Article
· Feb 23, 2024 5m read
Using an Azure bot to access IRIS

I have challenged to create a bot application using Azure Bot that can retrieve and post data to IRIS for Health.

A patient's data has already been registered in the FHIR repository of IRIS for Health.

The patient's MRN is 1001. His name is Taro Yamada. (in Japanese :山田 太郎)

This bot can post new pulse oximeter readings as an observation resource linked to the patient.

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In today's data landscape, businesses encounter a number of different challenges. One of them is to do analytics on top of unified and harmonized data layer available to all the consumers. A layer that can deliver the same answers to the same questions irrelative to the dialect or tool being used.

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Making a Chart using Intersystems IRIS + Python

How to use the IRIS Native API in Python to access globals and plot some charts.

Why Python?

With a large adoption and use in the world, Python have a great community and a lot of accelerators | libraries to deploy any kind of application.
If you are curious (https://www.python.org/about/apps/)

Open Exchange app
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In this GitHub we fine tune a bert model from HuggingFace on review data like Yelp reviews.

The objective of this GitHub is to simulate a simple use case of Machine Learning in IRIS :
We have an IRIS Operation that, on command, can fetch data from the IRIS DataBase to train an existing model in local, then if the new model is better, the user can override the old one with the new one.
That way, every x days, if the DataBase has been extended by the users for example, you can train the model on the new data or on all the data and choose to keep or let go this new model.

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The objective of the article is to provide the reader with the following informations:

  • Configure and use the FHIR server
  • Create an OAuth2 Authorization Server
  • Bind the FHIR server to the OAuth2 Authorization Server for support of SMART on FHIR
  • Use the interoperability capabilities of IRIS for Health to filter FHIR resources
  • Create a custom operation on the FHIR server

Schema of the article:

Schema

Open Exchange app
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In this article, I am trying to identify the multiple areas to develop the features we can able to do using python and machine learning.

Each hospital is every moment trying to improve its quality of service and efficiency using technology and services.

The healthcare sector is one of the very big and vast areas of service options available and python is one of the best technology for doing machine learning.

In every hospital, humans will come with some feelings, if this feeling will understand using technology is make a chance to provide better service.

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In the world of APIs, REST is very extended. But what happens when you need more flexibility in your data-fetching strategies? For instance letting the client to choose what fields is going to receive. Enter GraphQL, a query language for your APIs that provides a flexible alternative to REST.

In this post, we will:

  • Compare REST and GraphQL.
  • Dive into the basics of GraphQL: Queries, Mutations, and HTTP.
  • Build a simple GraphQL server implementation using Graphene, SQLAlchemy, and Flask over data in InterSystems IRIS.
  • Explore how to deploy your GraphQL server as a WSGI application in IRIS.
Open Exchange app
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Introduction

A password manager is an important security tool that allows users to store and manage their passwords without the need to remember or write them down in insecure places. In this article, we will explore the development of a simple password manager using the Flask framework and the InterSystems IRIS database.

Key Features

Our password manager application will provide the following key features:

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Article
· Jul 30, 2022 5m read
Introduction to Django part 3

Continuing to observe the possibilities of Django, and usage with IRIS. The first we have looked how to define models and connect to tables already existing in IRIS, than we extended embedded Django Administration portal, with an ability to see what data we have in that models, with filters, editing and even pagination.

Time to go to real action, now we a going to create some REST API, on Django, based on the same data, we used before from the package posts-and-tags.

To do so, we will use Django REST Framework

Django REST Framework

Django REST framework is a powerful and flexible toolkit for building Web APIs.

Some reasons you might want to use REST framework:

  • The Web browsable API is a huge usability win for your developers.
  • Authentication policies including packages for OAuth1a and OAuth2.
  • Serialization that supports both ORM and non-ORM data sources.
  • Customizable all the way down - just use regular function-based views if you don't need the more powerful features.
  • Extensive documentation, and great community support.
  • Used and trusted by internationally recognised companies including Mozilla, Red Hat, Heroku, and Eventbrite.

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Making a blog using Python + IRIS Globals

Since I started to use internet (late 90's), I always had a CMS (content management system) present to make easier post
any information in a blog, social media or even an enterprise page. And later years putting all my code into github I
used to document it on a markdown file. Observing how easy could be persisting data into Intersystems IRIS with the
Native API I decided to make this application and force myself to forget a little of SQL and stay open to key-value database
model.

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Introduction

As the health interoperability landscape expands to include data exchange across on-premise as well as hosted solutions, we are seeing an increased need to integrate with services such as cloud storage. One of the most prolifically used and well supported tools is the NoSQL database DynamoDB (Dynamo), provided by Amazon Web Services (AWS).

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Why should you connect Flask to InterSystems IRIS?

The first thing that comes to mind when we think about combining Flask with IRIS is a portal to interact with your clients and partners. A good example would be a website for patients to access their clinical exams. Of course, this case would require a whole new layer of security, which we did not cover in our last article. However, we can effortlessly add it with Werkzeug, for instance.

Open Exchange app
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Learning LLM Magic

The world of Generative AI has been pretty inescapable for a while, commercial models running on paid Cloud instances are everywhere. With your data stored securely on-prem in IRIS, it might seem daunting to start getting the benefit of experimentation with Large Language Models without having to navigate a minefield of Governance and rapidly evolving API documentation. If only there was a way to bring an LLM to IRIS, preferably in a very small code footprint....

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Interoperability on Python (IoP) is a proof-of-concept project designed to showcase the power of the InterSystems IRIS Interoperability Framework when combined with a Python-first approach.IoP leverages Embedded Python (a feature of InterSystems IRIS) to enable developers to write interoperability components in Python, which can seamlessly integrate with the robust IRIS platform. This guide has been crafted for beginners and provides a comprehensive introduction to IoP, its setup, and practical steps to create your first interoperability component. By the end of this article, you will get a clear understanding of how to use IoP to build scalable, Python-based interoperability solutions.

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Hi Developers!

This is the second post on the resources for Developers. This part is about Open Exchange

Using Open Exchange to Learn InterSystems

InterSystems Open Exchange is a applications gallery of tools, connectors, and libraries which InterSystems Developers submit to share the experience, approaches and do business. All the applications are either built with InterSystems data platforms or are intended to use for development with InterSystems data platforms.

If you are a beginner developer you can take a look at applications in Technology Example category. All the applications in this category come with open source code repositories, so you are able to run the samples and examples in a docker container with IRIS on your laptop or in the cloud IRIS sandbox. Examples:

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Article
· Jul 7, 2023 8m read
Iris FHIR Python Strategy

Description

With InterSystems IRIS FHIR Server you can build a Strategy to customize the behavior of the server (see documentation for more details).

Image

This repository contains a Python Strategy that can be used as a starting point to build your own Strategy in python.

This demo strategy provides the following features:

  • Update the capability statement to remove the Account resource
  • Simulate a consent management system to allow or not access to the Observation resource
    • If the User has sufficient rights, the Observation resource is returned
    • Otherwise, the Observation resource is not returned
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This is the third post of a series explaining how to create an end-to-end Machine Learning system.

Training a Machine Learning Model

When you work with machine learning is common to hear this work: training. Do you what training mean in a ML Pipeline?
Training could mean all the development process of a machine learning model OR the specific point in all development process
that uses training data and results in a machine learning model.

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We have a yummy dataset with recipes written by multiple Reddit users, however most of the information is free text as the title or description of a post. Let's find out how we can very easily load the dataset, extract some features and analyze it using features from OpenAI large language model within Embedded Python and the Langchain framework.

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