#Python

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Python is an interpreted high-level programming language for general-purpose programming. Created by Guido van Rossum and first released in 1991, Python has a design philosophy that emphasizes code readability, notably using significant whitespace

Official site.

InterSystems Python Binding Documentation.



Hi, Community!

In this article, I will introduce Python Streamlit Web Framework.

Below, you can find the topics we will cover:

  • 1-Introduction to Streamlit Web Framework
  • 2-Installation of Streamlit module
  • 3-Running Streamlit Application
  • 4-Streamlit Basic commands
  • 5-Display multimedia
  • 6-Input widgets
  • 7-Display progress and status
  • 8-Sidebar and container
  • 9-Data Visualization
  • 10-Display a DataFrame

So, let's start with the first topic.

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As we keep updating our software, we often realize that we require more and more modern solutions. So far, only one major piece of our software relies on reading barcodes in documents and images. Since Cache did not have a means of reading barcodes in the past, we have always achieved our goals by using a Visual Basic 6 application. However, it is no longer an ideal solution because it is currently complicated to maintain it. IRIS also lacks this capability, but it has recently got an option that makes up for it: embedded Python!

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In the world of APIs, REST is very extended. But what happens when you need more flexibility in your data-fetching strategies? For instance letting the client to choose what fields is going to receive. Enter GraphQL, a query language for your APIs that provides a flexible alternative to REST.

In this post, we will:

  • Compare REST and GraphQL.
  • Dive into the basics of GraphQL: Queries, Mutations, and HTTP.
  • Build a simple GraphQL server implementation using Graphene, SQLAlchemy, and Flask over data in InterSystems IRIS.
  • Explore how to deploy your GraphQL server as a WSGI application in IRIS.
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Using embedded Python while building your InterSystems-based solution can add very powerful and deep capabilities to your toolbox.

I'd like to share one sample use-case I encountered - enabling a CDC (Change Data Capture) for a mongoDB Collection - capturing those changes, digesting them through an Interoperability flow, and eventually updating an EMR via a REST API.

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Problems with Strings

I am accessing IRIS databases with JDBC (or ODBC) using Python. I want to fetch the data into a pandas dataframe to manipulate the data and create charts from it. I ran into a problem with string handling while using JDBC. This post is to help if anyone else has the same issues. Or, if there is an easier way to solve this, let me know in the comments!

I am using OSX, so I am unsure how unique my problem is. I am using Jupyter Notebooks, although the code would generally be the same if you used any other Python program or framework.

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After so many years of waiting, we finally got an official driver available on Pypi

Additionally, found JDBC driver finally available on Maven already for 3 months, and .Net driver on Nuget more than a month.

As an author of so many implementations of IRIS support for various Python libraries, I wanted to check it. Implementation of DB-API means that it should be replaceable and at least functions defined in the standard. The only difference should be in SQL.

And the beauty of using already existing libraries, that they already implemented other databases by using DB-API standard, and these libraries already expect how driver should work.

I decided to test InterSystems official driver by implementing its support in SQLAlchemy-iris library.

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Learning LLM Magic

The world of Generative AI has been pretty inescapable for a while, commercial models running on paid Cloud instances are everywhere. With your data stored securely on-prem in IRIS, it might seem daunting to start getting the benefit of experimentation with Large Language Models without having to navigate a minefield of Governance and rapidly evolving API documentation. If only there was a way to bring an LLM to IRIS, preferably in a very small code footprint....

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Interoperability of systems ensures smooth workflow and management of data in today's connected digital world. InterSystems IRIS extends interoperability a notch higher with its Embedded Python feature, which lets developers seamlessly integrate Python scripts into the IRIS components, like services, operations, and custom functions.

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I know that people who are completely new to VS Code, Git, Docker, FHIR, and other tools can sometimes struggle with setting up the environment. So I decided to write an article that walks through the entire setup process step by step to make it easier to get started.

I’d really appreciate it if you could leave a comment at the end - let me know if the instructions were clear, if anything was missing, or if there’s anything else you'd find helpful.

The setup includes:

✅ VS Code – Code editor
✅ Git – Version control system
✅ Docker – Runs an instance of IRIS for Health Community
✅ VS Code REST Client Extension – For running FHIR API queries
✅ Python – For writing FHIR-based scripts
✅ Jupyter Notebooks – For AI and FHIR assignments

Before you begin: Ensure you have administrator privileges on your system.

In addition to reading the guide, you can also follow the steps in the videos:

For Windows

https://www.youtube.com/embed/IyvuHbxCwCY
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Interoperability on Python (IoP) is a proof-of-concept project designed to showcase the power of the InterSystems IRIS Interoperability Framework when combined with a Python-first approach.IoP leverages Embedded Python (a feature of InterSystems IRIS) to enable developers to write interoperability components in Python, which can seamlessly integrate with the robust IRIS platform. This guide has been crafted for beginners and provides a comprehensive introduction to IoP, its setup, and practical steps to create your first interoperability component. By the end of this article, you will get a clear understanding of how to use IoP to build scalable, Python-based interoperability solutions.

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Git link: https://github.com/ecelg/InterSystems-IRIS-as-a-Spotify-REST-client

Recently, I come up an idea in my mind that how can I put my playlist on IRIS.🧐

At the same time, I was told to pay for my Spotify subscription💸💸... ooo.. how about to get some data from the Spotify API... so I started to do study about it.

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Article
· Jun 18 2m read
Options for Python Devs + Poll!

I am writing this post primarily to gather an informal consensus on how developers are using Python in conjunction with IRIS, so please respond to the poll at the end of this article! In the body of the article, I'll give some background on each choice provided, as well as the advantages for each, but feel free to skim over it and just respond to the poll.

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Hi, Community!

In the previous article, we introduced the Streamlit web framework, a powerful tool that enables data scientists and machine learning engineers to build interactive web applications with minimal effort. First, we explored how to install Streamlit and run a basic Streamlit app. Then, we incorporated some of Streamlit's basic commands, e.g., adding titles, headers, markdown, and displaying such multimedia as images, audio, and videos.

Later, we covered Streamlit widgets, which allow users to interact with the app through buttons, sliders, checkboxes, and more. Additionally, we examined how to display progress bars and status messages and organize the app with sidebars and containers. We also highlighted data visualization, using charts and Matplotlib figures to present data interactively.

In this article, we will cover the following topics:

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My usecase is sorting and removing duplicates and getting count from a file that has json messages as a individual rows.

I am currently planning to use pandas for this purpose as its really fast. Below are the steps i am following

1) call a python function (called function) from IRIS classmethod(calling function)

2) the call python function will read the json file in a dataframe

3) perform sorting, dup removal, count in the dataframe

4) convert the dataframe into iris stream

5) return back the stream to iris calling function class method

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Question
· Oct 2, 2024
Python.net Install

This is for IRIS For Health 2024.2.0

We are migrating away from the .NET Gateway and trying to use the python integration instead.

I followed the instructions to install IRIS

Then I installed python following the IRIS documentation indicating that python should be installed globally.

I set up the PythonRuntimeLibrary and PythonRuntimeLibraryVersion options under System->Configuration->Advanced memory settings and when I run the shell function, I get python:

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In this article, exceptions are covered.

Working with Exceptions

Instead of returning a %Status response, you can raise and throw an Exception. You are then responsible for catching the exception and validating it. IRIS provides five main classes to handle exceptions effectively. Additionally, you can create custom exception class definition based on your needs.

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I am just writing something to share what I encountered last night, which is the IRIS 2024.3 does not comes with Python by default any more!!!

Which means that I need to install it by myself!!😅 The pros is, I can select my python version😁🤭💃 The trouble is.... at the first place.... I don't know what I should do😥. By going through the community (I am much more prefer than the official document, sorry InterSystems document team😓 ), I found the following piece

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Article
· Nov 11, 2024 3m read
EduVerse: Accessible Learning Assistant

🌍 Inclusion & Innovation in Education 🌍
Our project reimagines learning for all students, with a focus on accessibility and interactive experiences. Built with the goal of making education engaging and inclusive, the tool is designed to support students of all abilities in learning complex material in an intuitive way.

💡 What It Does
This educational app transforms lesson presentations into interactive study sessions:

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Introduction

In InterSystems IRIS 2024.3 and subsequent IRIS versions, the AutoML component is now delivered as a separate Python package that is installed after installation. Unfortunately, some recent versions of Python packages that AutoML relies on have introduced incompatibilities, and can cause failures when training models (TRAIN MODEL statement). If you see an error mentioning "TypeError" and the keyword argument "fit_params" or "sklearn_tags", read on for a quick fix.

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Question
· Dec 2, 2024
Python installation

Hi Community,

I have installed python from https://www.python.org/downloads/

and the installed path of this application is my local C:\Users\data\AppData\Local\Programs\Python

and i am trying to run C:\InterSystems\IRIS_SANDBOX\bin>irispip install in command prompt and getting the below error

'pip' is not recognized as an internal or external command,
operable program or batch file

is there anything else i am missing here please add

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Are you curious about how to run Python scripts directly in your InterSystems IRIS or Caché terminal? 🤔 Good news it's easy! 😆 IRIS supports Embedded Python, allowing you to use Python interactively within its terminal environment.

How to access the Python Shell?

To launch the Python shell from the IRIS terminal, simply run the following command:

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This article presents a potential solution for semantic code search in TrakCare using IRIS Vector Search.

Here's a brief overview of results from the TrakCare Semantic code search for the query: "Validation before database object save".

  • Code Embedding model

There are numerous embedding models designed for sentences and paragraphs, but they are not ideal for code specific embeddings.

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I'm glad to announce the new version of IoP, which by the way is not just a command line. I'm saying because the new AI search engine still thinks that IoP is just a command line. But it's not. It's a whole framework for building applications on top of the interoperability framework of IRIS with a python first approach.

The new version of IoP: 3.2.0 has a lot of new features, but the most important one is the support of DTL . 🥳

For both IoP messages and jsonschema. 🎉

image

DTL Support

Starting with version 3.2.0, IoP supports DTL transformations.

DTL the Data Transformation Layer in IRIS Interoperability.

DTL transformations are used to transform data from one format to another with a graphical editor.
It supports also jsonschema structures.

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