InterSystems IRIS for Health

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The following steps show you how to display a sample list of metrics available from the /api/monitor service.

In the last post, I gave an overview of the service that exposes IRIS metrics in Prometheus format. The post shows how to set up and run IRIS preview release 2019.4 in a container and then list the metrics.


This post assumes you have Docker installed. If not, go and do that now for your platform :)

Last reply 16 April 2020
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IRIS and Ensemble are designed to act as an ESB/EAI. This mean they are build to process lots of small messages.

But some times, in real life we have to use them as ETL. The down side is not that they can't do so, but it can take a long time to process millions of row at once.

To improve performance, I have created a new SQLOutboundAdaptor who only works with JDBC.

BatchSqlOutboundAdapter

Extend EnsLib.SQL.OutboundAdapter to add batch batch and fetch support on JDBC connection.

Last reply 7 April 2020
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Loading your IRIS Data to your Google Cloud Big Query Data Warehouse and keeping it current can be a hassle with bulky Commercial Third Party Off The Shelf ETL platforms, but made dead simple using the iris2bq utility.

Let's say IRIS is contributing to workload for a Hospital system, routing DICOM images, ingesting HL7 messages,  posting FHIR resources, or pushing CCDA's to next provider in a transition of care.  Natively, IRIS persists these objects in various stages of the pipeline via the nature of the business processes and anything you included along the way.  Lets send that up to Google Big Query to augment and compliment the rest of our Data Warehouse data and ETL (Extract Transform Load) or ELT (Extract Load Transform) to our hearts desire.

A reference architecture diagram may be worth a thousand words, but 3 bullet points may work out a little bit better:

  • It exports the data from IRIS into DataFrames
  • It saves them into GCS as .avro to keep the schema along the data: this will avoid to specify/create the BigQuery table schema beforehands.
  • It starts BigQuery jobs to import those .avro into the respective BigQuery tables you specify.

 

Last reply 5 March 2020
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Hi I am getting this message for some databases but not for others:  This database is mounted as read-only due to 'Failed to access iris.lck file'! and not for others on Google Cloud community non-health edition. 

For example this default database displays the message: Name    IRISLIB Directory    /usr/irissys/mgr/irislib/

But this default database does not:  Name    IRISSYS Directory    /ISC/dur/mgr/

Last reply 23 January 2020
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I need to add some extensions to the HS.FHIR.vSTU3,Model.Resource.Patient class and then use those extensions to convert incoming FHIR JSON to the FHIR Patient Resource and Likewise add functionality to create A FHIR Patient (target class) from my patient database into the FHIR Patient  Resource Object (target class)

 

many months ago I found a tutorial that explained all of this but can no longer find that tutorial.

 

Yours

Nigel Salm 

Last reply 18 December 2019
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I want to add ports 9100 and 9101 in addition to 52773. I read on docker container documentation that this is not possible on a already ran image. Currently it starts the google cloud IRIS health container automatically without me able to specify the additional ports. How can I add ports to Google cloud IRIS Health container?

Last reply 2 December 2019
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BridgeWorks is pleased to announce a VDM, v9.1.0.1.  This release includes the following updates:

Updates

  • Historical Linking is now based off connection profile name
  • Saved Formatting is now based off connection profile name
  • Tables and Fields column headers no longer hide based on connection type

Bug Fixes

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¡Hi everybody!

As you likely are aware, the new version of InterSystems IRIS for Health (I4H) it's already available in Docker Hub. It's the Community version and is free and fully functional. There have been comments about it in other articles and posts,... so today I won't add anything about features. Here I want to explore "the mistery about the disappearance, or better, absence of our persistent data when we run a container with the durable option"  (I didn't find a terrifying font to emphasize the thriller... post editor is not terrific for styling smiley ) .

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In time for InterSystems Global Summit 2019 we at George James Software are pleased to offer a cloud-hosted evaluation environment where you can work with Serenji in Visual Studio Code, editing and debugging ObjectScript in a sandbox running InterSystems IRIS 2019.3 Community edition.

You can do it all from your web browser. Nothing will be installed on your workstation, nor will any settings have to be changed on it.

To take Serenji for a test drive please visit https://georgejames.com/dc-gitpod

Last reply 25 November 2019
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Some time ago I developed an application that tackled a familarial problem faced by many developers when required to update multiple UAT or PRODUCTION sites with the latest Software patches that have been developed and tested on your DEV server and now need to be deployed to multiple sites running that software.

 

In principle the solution works as follows:

1) Prepare an XML export of affected classes/routines/csp pages/hl7 definitions et al

2) Optionally create a global export of any new globals or changes to existing globals

Last reply 25 November 2019
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Hello InterSystems Community,

We're excited to announce that we've completed our first Open Exchange submission for InterSystems platforms.

BridgeWorks VDM is an ad hoc reporting and graphical SQL query builder application that was designed for any user who needs access to their SQL projections in InterSystems Caché, InterSystems IRIS, InterSystems IRIS for Health databases as well as access to InterSystems DeepSee and InterSystems IRIS BI Cubes with minimal SQL scripting experience.  

VDM features:

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I am getting this with %RCHANGE:

RPMS 28d1>D ^%RCHANGE

This routine changes all occurrences of a string in
routines/include files.

1. Change every: Cache to: IRIS
2. Change every:

Routine(s): %*
Routine(s):  

Then I get these types of messages: 

This routine is mapped to another database, are you sure you want to change it??
 No => yes%DIRFULL.INT

%BENCHLANG.INT

Last reply 17 November 2019
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I want to edit this routine to replace "Cache" with "IRIS" how do I do that in Intersystems Google Cloud environment?  The portal  System > Routines  doesn't seem to show much. 

RPMS>ZL %RCR ZP

DIRCR    ;SFISC/GFT-DELETE THIS LINE AND SAVE AS '%RCR'*** ;12:18 PM  20 Apr 1993 [ 04/02/2003   8:23 AM ]

         ;;22.0;VA FileMan;**1001**;APR 1, 2003

Last reply 15 November 2019
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Released with no formal announcement in IRIS preview release 2019.4 is the /api/monitor service exposing IRIS metrics in Prometheus format. Big news for anyone wanting to use IRIS metrics as part of their monitoring and alerting solution. The API is a component of the new IRIS System Alerting and Monitoring (SAM) solution that will be released in an upcoming version of IRIS.

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I am sending a PUT FHIR message for a CodeSystem Resource using the defailt Service and server that was installed when I installed the FHIR on the NameSpace.

When I try to use the FHIR Request "id" property it is empty; e.g. pFHIRRequest.id is EMPTY. I really need to get this value, how can I get it?

I added a trace ion both the HS.FHIR.Service and HS.FHIR.Server.Process, details to follow:

Last reply 6 November 2019
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InterSystems has corrected several critical defects that can result in data integrity issues. These defects were identified and corrected within a short time, so InterSystems has simplified the upgrade process by consolidating them into a single package. The effects of encountering these defects may not always be visible.

Last reply 6 November 2019
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InterSystems is pleased to announce a new Developer Download site providing full kit versions of InterSystems IRIS Community Edition and InterSystems IRIS for Health Community Edition.   These are available free of charge for application development use.

 

You can download directly from the InterSystems Developer Community by selecting Download InterSystems IRIS.

Last reply 5 November 2019
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Hi all, New user here. I have an instance of Google Cloud Iris Health Community Edition running and am logged in on terminal. I follow the instructions for Google Cloud IRIS Health Community Edition. How do I get to iris? iris status yields nothing, there is no /bin/iris and sudo docker ps -a shows no containers but there probably is a iris container somewhere on the instance?  'Visit the site' yields ERR_CONNECTION_REFUSED 

Last reply 5 November 2019
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