Hi Community,

This post is a introduction of my open exchange iris-fhir-client application.

iris-fhir-client can connect to any open FHIR Server by using embedded python with the help of fhirpy Library.
Get Resource information by terminal and by using CSP web application.

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Article
· Feb 8, 2021 2m read
Websocket Client Embedded Python

This is a demo to make use of a simple WebSocket Client with Embedded Python in IRIS.

How to Test it

  • Run an Iris Session in Docker
  • Select your WebSocket Echo Server
  • Enter the text you want to send or generate it
  • Send it and see the result
$ docker-compose exec iris iris session iris "##class(rccpy.WSockPy).Run()"

*** Welcome to WebSocket Embedded Python Demo ***

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Let me introduce my new project, which is irissqlcli, REPL (Read-Eval-Print Loop) for InterSystems IRIS SQL

  • Syntax Highlighting
  • Suggestions (tables, functions)
  • 20+ output formats
  • stdin support
  • Output to files

Install it with pip

pip install irissqlcli

Or run with docker

docker run -it caretdev/irissqlcli irissqlcli iris://_SYSTEM:SYS@host.docker.internal:1972/USER

Connect to IRIS

$ irissqlcli iris://_SYSTEM@localhost:1972/USER -W
Password for _SYSTEM:
Server:  InterSystems IRIS Version 2022.3.0.606 xDBC Protocol Version 65
Version: 0.1.0
[SQL]_SYSTEM@localhost:USER> select $ZVERSION
+---------------------------------------------------------------------------------------------------------+
| Expression_1                                                                                            |
+---------------------------------------------------------------------------------------------------------+
| IRIS for UNIX (Ubuntu Server LTS for ARM64 Containers) 2022.3 (Build 606U) Mon Jan 30 2023 09:05:12 EST |
+---------------------------------------------------------------------------------------------------------+
1 row in set
Time: 0.063s
[SQL]_SYSTEM@localhost:USER> help
+----------+-------------------+------------------------------------------------------------+
| Command  | Shortcut          | Description                                                |
+----------+-------------------+------------------------------------------------------------+
| .exit    | \q                | Exit.                                                      |
| .mode    | \T                | Change the table format used to output results.            |
| .once    | \o [-o] filename  | Append next result to an output file (overwrite using -o). |
| .schemas | \ds               | List schemas.                                              |
| .tables  | \dt [schema]      | List tables.                                               |
| \e       | \e                | Edit command with editor (uses $EDITOR).                   |
| help     | \?                | Show this help.                                            |
| nopager  | \n                | Disable pager, print to stdout.                            |
| notee    | notee             | Stop writing results to an output file.                    |
| pager    | \P [command]      | Set PAGER. Print the query results via PAGER.              |
| prompt   | \R                | Change prompt format.                                      |
| quit     | \q                | Quit.                                                      |
| tee      | tee [-o] filename | Append all results to an output file (overwrite using -o). |
+----------+-------------------+------------------------------------------------------------+
Time: 0.012s
[SQL]_SYSTEM@localhost:USER>

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Overview

We started to use Azure Service Bus (ASB) as an enterprise messaging solution 3 years ago. It is being used to publish and consume data between many applications in the organization. Since the data flow is complex, and one application’s data is usually needed in multi applications the “publisher” ---> ”multiple subscribers” model was a great fit. The ASB usage in the organization is dozens of millions of messages per day, while IRIS platform is having around 2-3 million messages/day.

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   _________ ___ ____  
  |__  /  _ \_ _|  _ \ 
    / /| |_) | || |_) |
   / /_|  __/| ||  __/ 
  /____|_|  |___|_|    

Starting in version 2021.1, InterSystems IRIS began shipping with a python runtime in the engine's kernel. However, there was no way to install packages from within the instance. The main draw of python is its enormous package ecosystem. With that in mind, I introduce my side project zpip, a pip wrapper that is callable from the iris terminal.

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The invention and popularization of Large Language Models (such as OpenAI's GPT-4) has launched a wave of innovative solutions that can leverage large volumes of unstructured data that was impractical or even impossible to process manually until recently.

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This formation, accessible on my GitHub, will cover, in half a hour, how to read and write in csv and txt files, insert and get inside the IRIS database and a distant database using Postgres or how to use a FLASK API, all of that using the Interoperability framework using ONLY Python following the PEP8 convention.

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Date and Time is an important factors in our life. Because all applications are engaging based on Date/Time. But our world is split into multiple time zones. if our product is launched in the world, to maintain the history of events we are definitely required to convert all times to our local time or UTC ( Coordinated Universal Time ). As I know, many known programming languages of C#, JavaScript, Java, etc., provided the library to convert the date and time. i.e with a time zone name we can be able to convert without knowing the UTC offset.

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While starting the development with IRIS we have a distribution kit or in case of Docker we are pulling the docker image and then often we need to initialize it and setup the development environment. We might need to create databases, namespaces, turn on/off some services, create resources. We often need to import code and data into IRIS instance and run some custom code to init the solution.

And there plenty of templates on Open Exchange where we suggest how to init REST, Interoperability, Analytics, Fullstack and many other templates with ObjectScript. What if we want to use only Python to setup the development environment for Embedded Python project with IRIS?

So, the recent release of Embedded Python template is the pure python boilerplate that could be a starting point for developers that build python projects with no need to use and learn ObjectScript. This article expresses how this template could be used to initialize IRIS. Here we go!

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Article
· Feb 27, 2022 2m read
Dash-Python-IRIS

We are happy to share interesting information with you, as well as tell you why Python is good, where it is used.

Among the most used libraries are NumPy and Pandas. NumPy (Numerical Python) is used to sort large datasets. It simplifies mathematical operations and their vectorization on arrays. Pandas offers two data structures: Series (a list of elements) and Data Frames (a table with multiple columns). This library converts data into a Data Frame, allowing you to remove and add new columns, as well as perform various operations.

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Problem

In a fast-paced clinical environment, where quick decision-making is crucial, the lack of streamlined document storage and access systems poses several obstacles. While storage solutions for documents exist (e.g, FHIR), accessing and effectively searching for specific patient data within those documents meaningfully can be a significant challenge.

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Article
· Feb 17, 2023 2m read
Returning values with python

Why am I writting this?

Last year I made an article for starters on using embedded python. Later, it started a little discussion on how to return values with python and I found some interesting observations that are worth writing a little article. Also, hopefully I can reach more people by writing this.

Possible situations

There are two things you'll need to care about when returning a value with python. The first is the type you're trying to return and the second is where you're returning it.

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With the advent of Embedded Python, a myriad of use cases are now possible from within IRIS directly using Python libraries for more complex operations. One such operation is the use of natural language processing tools such as textual similarity comparison.

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Article
· Feb 8, 2022 1m read
GlobalToJSON-embeddedPython-pure

I have created a package to export a Global into JSON object file and to re-create it by reloading from this file
embeddedPython refers to the new available technologies. It should be understood as a learning exercise of
how to handle the language interfaces. Only Global nodes containing data are presented in the generated JSON file.
Differently from the previous example, this one is using embedded Python only, no ObjectScript. Therefore PURE

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Written in reply to community post for can Python create HL7 Message dynamically.

Pre-requisites and setup

Use an integration enabled namespace.
Note: USER namespace is not enabled for interoperability by default.
If following suggest create a new interoperatibility namespace to explore functionality.

# Switch to
ZN "[Interoperability Namespace Name]"

# Launch interactive Python shell:
Do $SYSTEM.Python.Shell()

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Article
· Apr 16, 2023 4m read
Tuples ahead

Overview

Cross-Skilling from IRIS objectScript to Python it becomes clear there are some fascinating differences in syntax.

One of these areas was how Python returns Tuples from a method with automatic unpacking.

Effectively this presents as a method that returns multiple values. What an awesome invention :)

out1, out2 = some_function(in1, in2)

ObjectScript has an alternative approach with ByRef and Output parameters.

Do ##class(some_class).SomeMethod(.inAndOut1, in2, .out2)

Where:

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Methods written in ObjectScript can use pass-by-reference arguments to return information to the caller. Python doesn’t support pass-by-reference arguments, so Embedded Python in IRIS doesn’t support them either. That's it, that's the end of the post, hope you liked it. 😉 But wait, what about the Classic Rock & Roll?

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I'm proud to announce the new release of iris-pex-embedded-python (v2.3.1) with a new command line interface.

This command line is called iop for Interoperability On Python.

First I would like to present in few words the project the main changes since the version 1.

A breif history of the project

Version 1.0 was a proof of concept to show how the interoperability framework of IRIS can be used with a python first approach while remaining compatible with any existing ObjectScript code.

What does it mean? It means that any python developer can use the IRIS interoperability framework without any knowledge of ObjectScript.

Example :

from grongier.pex import BusinessOperation

class MyBusinessOperation(BusinessOperation):

    def on_message(self, request):
        self.log.info("Received request")

Great, isn't it?

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Article
· Mar 29, 2023 1m read
Named Parameter In SQL with Python

Quick Tips: Total Productive Maintenance

Named parameters can be achieved with SQLAlchemy :

from sqlalchemy import create_engine, text,types,engine

_engine = create_engine('iris+emb:///')

with _engine.connect() as conn:
    rs = conn.execute(text("select :some_private_name"), {"some_private_name": 1})
    print(rs.all())

or with native api

from sqlalchemy import create_engine, text,types,engine

# set URL for SQLAlchemy
url = engine.url.URL.create('iris', username='SuperUser', password='SYS', host='localhost', port=33782, database='FHIRSERVER')

_engine = create_engine(url)

with _engine.connect() as conn:
    rs = conn.execute(text("select :some_private_name"), {"some_private_name": 1})
    print(rs.all())

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InterSystems Official
· Mar 27 4m read
2025.1 Modernizing Interoperability User Experience

The Interoperability user interface now includes modernized user experiences for the DTL Editor and Production Configuration applications that are available for opt-in in all interoperability products. You can switch between the modernized and standard views. All other Interoperability screens remain in the Standard user interface. Please note that changes are limited to these two applications and we identify below the functionality that is currently available.

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