What is Web Scraping:

In simple terms, Web scraping, web harvesting, or web data extraction is an automated process of collecting large data(unstructured) from websites. The user can extract all the data on particular sites or the specific data as per the requirement. The data collected can be stored in a structured format for further analysis.

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Article
Dmitry Maslennikov · Aug 20, 2021 6m read
GitHub Codespaces with IRIS

Some time ago GitHub, has announced the new feature, GitHub Codespaces. It gives an ability to run VSCode in the browser, with almost the same power as it would run locally on your machine, but also with a power of clouds, so, you are able to choose the machine type with up to 32 CPU cores and 64 GB of RAM.

Looks impressive, is not it? But how it could help us, to work with projects driven by InterSystems IRIS? Let's have a look, how to configure it for us.

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Hi Devs!

For me, one of the most painful things about ObjectScript is ##class(Class).Method() typing to call a class method in code or in a terminal. I even submitted an idea to simplify it in ObjectScript.

But! There is a new feature in VSCode ObjectScript that was just introduced to the plugin - Copy Invocation!

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In the previous article, we talked about the flow of data to request the test and receive the results of the requested test. Now let's talk about one of the most important messages of HL7v2 standard.

Every time a receiving application accepts a message and consumes the message data, it is expected to send an ACKnowledgement (ACK) message back to the sending application. The sending application is expected to keep on sending a message until it has received an ACK message. It is done to inform the sending application that its message was successfully received, that it is (not) valid in accordance with HL7 rules and, if it is compliant, that it will be processed at some point.

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If you are using Python, you can use the built-in venv module to create a virtual environment. This module is the recommended way to create and manage virtual environments.

A virtual environment is a tool that helps to keep dependencies required by different projects separate by creating isolated python virtual environments for them. It solves the “Project X depends on version 1.x but, Project Y needs 4.x” dilemma, and keeps your global site-packages directory clean and manageable.

So if like me you work a lot with Python, you can use the venv module to create a virtual environment for your project. This will allow you to install packages without affecting the global Python installation.

You will find here two neat alias to create and activate a virtual environment.

Python aliases

alias venv="python3 -m venv .venv; source .venv/bin/activate"
alias irisvenv="python3 -m venv .venv; source .venv/bin/activate; pip install https://github.com/grongierisc/iris-embedded-python-wrapper/releases/download/v0.0.1/iris-0.0.1-py3-none-any.whl"

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1. interoperability-embedded-python

This proof of concept aims to show how the iris interoperability framework can be use with embedded python.

1.1. Table of Contents

1.2. Example

import grongier.pex
import iris
import MyResponse

class MyBusinessOperation(grongier.pex.BusinessOperation):

    def OnInit(self):
        print("[Python] ...MyBusinessOperation:OnInit() is called")
        self.LOGINFO("Operation OnInit")
        return

    def OnTeardown(self):
        print("[Python] ...MyBusinessOperation:OnTeardown() is called")
        return

    def OnMessage(self, messageInput):
        if hasattr(messageInput,"_IsA"):
            if messageInput._IsA("Ens.StringRequest"):
                self.LOGINFO(f"[Python] ...This iris class is a Ens.StringRequest with this message {messageInput.StringValue}")
        self.LOGINFO("Operation OnMessage")
        response = MyResponse.MyResponse("...MyBusinessOperation:OnMessage() echos")
        return response

1.3. Regsiter a component

No ObjectScript code is needed.

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InterSystems Official
Fabiano Sanches · Dec 16, 2022 1m read
How to enroll in an Early Access Program (EAP)?

Early Access Program (EAP) is a way to to deliver specific features early to a group of people who will test and provide feedback on that feature.

InterSystems has been releasing different versions (or pieces) of software over the last few years and improving features before they were released. Some examples so far: Columnar Storage; Built-in Python; FHIRSQL; and others.

But one characteristic of EAPs is that they may not be available to everyone. You have to enroll in the Program.

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IRIS BI

We offer you to embed business intelligence into your applications in order to give your users an opportunity to ask and answer sophisticated questions about their data. Typically, your application will include customizable dashboards that can provide insight into data from Business Intelligence models known as cubes.

In contrast with traditional BI systems that use static data warehouses, Business Intelligence keeps being constantly synchronized with the live transactional data.

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Suppose you have developed your own app with InterSystems technologies stack and now want to perform multiple deployments on the customers' side. During the development process you've composed a detailed installation guide for your application, because you need to not only import classes, but also fine-tune the environment according to your needs.
To address this specific task, InterSystems has created a special tool called %Installer. Read on to find out how to use it.

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Overview

Predictable storage IO performance with low latency is vital to provide scalability and reliability for your applications. This set of benchmarks is to inform users of IRIS considering deploying applications in AWS about EBS gp3 volume performance.

Summary

  • An LVM stripe can increase IOPS and throughput beyond single EBS volume performance limits.
  • An LVM stripe lowers read latency.
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The following steps show you how to display a sample list of metrics available from the /api/monitor service.

In the last post, I gave an overview of the service that exposes IRIS metrics in Prometheus format. The post shows how to set up and run IRIS preview release 2019.4 in a container and then list the metrics.


This post assumes you have Docker installed. If not, go and do that now for your platform :)

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In this article, we'd like to describe Med.me's incubation experience and takeaways, the cross-organizational booking problem, and our approach to solving it.

This exciting story started during one of the regular medtech meetups, where I met @Evgeny Shvarov, senior InterSystems chief of the Developer Community. Following the good old startup rule “pitch wherever you can”, I briefly explained to Evgeny Med.me concept – EHR exchange and appointment scheduling platform to automate and simplify communication between clinics, pharma on one hand and insurance companies, doctors, and patients on the other.

Evgeny listened carefully and replied that InterSystems provides plenty of products to solve the interoperability problems amongst the vast variety of EMRs and kindly advised me to hurry up to apply to the FHIR incubator Caelestinus powered by InterSystems.

That led to a start of an amazing 9-months long road where we were able to ramp up our understanding of interoperability, participate at the InterSystems Global Summit, find new customers and partners, and where the new concept of Resource Availability Exchange was born.

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Article
Iryna Mykhailova · Nov 29, 2022 6m read
What's HL7v2?!

HL7 (Health Level 7) is a set of technical specifications for computerized exchanges of clinical, financial and administrative data between hospital information systems (HIS). These specifications are variously integrated into the corpus of formal American (ANSI) and international (ISO) standards.

The L7 of HL7 indicates that it is a standard that operates at layer 7, in other words at the application layer, of the OSI model. This means that HL7 does not have to take into account exchange security considerations, or those of message transport (this being ensured by lower-level layers such as SSL/TLS for security or TCP for the transport of data for example). To be more precise, layer 7 supports communications for end-user processes and applications and the presentation of data for user-facing software applications. As the highest layer of the OSI model, and the closest to the end user, layer 7 provides application-specific functions such as identifying communication partners and the quality of service between them, determining resource availability, considering privacy and user authentication, and synchronizing communication, as well as connecting the application to the lower levels of the OSI model.

Returning to the HL7 standard, the HL7 version 2 standard (also known as Pipehat) was originally created in 1989 but is still being used and updated regularly, resulting in versions 2.1, 2.2, 2.3, 2.3.1, 2.4, 2.5, 2.5.1, 2.6, 2.7, 2.7.1, 2.8, 2.8.1, 2.8.2 and 2.9. The v2.x standards are backward compatible (e.g., a message based on version 2.3 will be understood by an application that supports version 2.6) and in higher versions, you will see some fields are left just for it.

Despite it being more than 30 years old, HL7v2 remains the most widely used healthcare interface standard by a large margin according to the HL7.org portal that tells that:

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In the previous article, we've seen the structure of one of the most used types of HL7 message - ADT (Admit, Discharge, Transfer) and an example of ADT^A04 with the description of all its fields. Now let's look at another flow of data having to do with ordering and fulfilling the orders of tests. I'm talking about ORM (as of version 2.5 you should use specific messages to order tests, like OMG, OML, OMD, OMS, OMN, OMI, and OMP), ORL and ORU messages. In a very simplified case, the exchange of data may look like this.

Let's look at these messages in more detail.

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Introduction

InterSystems IRIS 2020.1 includes PEX (Production EXtension Framework) to facilitate the development of IRIS Interoperability productions with components written in Java or .NET.

Thanks to PEX, an integration developer with knowledge of Java or .NET can benefit from the power, scalability, and robustness of the InterSystems IRIS Interoperability framework and be productive in no time.

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Updated Jan 19th, 2023.

Hi all,

I want to share a quick little method you can use to enable ssl with a self signed certificate on your local development instance of IRIS/HealthShare. This enables you to test https-specific features such as OAuth without a huge lift.

1. Install OpenSSL

Windows     : Download from https://www.openssl.org or other built OpenSSL Binary. 

Debian Linux: $ sudo apt-get -y install openssl

RHEL        : $ sudo yum install openssl
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Article
Piyush Adhikari · Oct 19, 2022 3m read
Ingestion and Querying Speed Test

The capacity of taking numerous records every second while also facilitating real-time queries simultaneously in real time is called Hybrid Transactional Analytical Processing (HTAP). It is also called Transactional analytics or Transanalytics or Translytics and is a very useful element in scenarios where there is constant flow of real time data coming from IIOT sensors or data on fluctuations in stock market, and supporting the need for querying these data sets in real-time or near real-time.

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Hi, I would like to tell you how easy it is to spin up IRIS for Health docker container in compute engine(VPS) in google cloud.

I know that to run IRIS for Health in AWS is pretty simple and straightforward, but I wanted to tried if its same easy in GCP environment.

Create vm instance. 2GB RAM is more than enough.

I used Debian 11 as Linux distro.

Standart persistent disk is cheaper.

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Article
Oliver Wilms · Dec 1, 2022 1m read
My First FHIR app

I participated in InterSystems Women’s Health FHIR contest, because I loved the challenge to learn a new-to-me technology. I wanted to develop an app that receives data from a mobile device like my Fitbit or a Smart Watch. I did not get access to such data except when I downloaded a spreadsheet (CSV file) showing my daily steps and sleep data. I saw in iris-fhir-template it imported some patient data to a FHIR server.

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Article
Henrique Dias · Apr 20, 2021 2m read
ZPM Explorer

Hi Community,

@José Roberto Pereira and I want to introduce ZPM Explorer, our graphic interface to explorer the greats applications that we have inside InterSystems Package Manager.

The idea

ZPM Explorer's idea is to make it easier for people to find out what ZPM offers. Every week, every day, a new app joins the ZPM world, so why not help developers and non-developers take advantage of this incredible world?!

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Hi Developers!

Often when we develop some library, tool, package, whatever on InterSystems ObjectScript we have a question, how we deploy this package on the target machine?

Also, we often expect that some other libraries already installed, so our package depends on them, and often on some particular version of it.

When you code on javascript, python, etc the role of packages deployment with dependency management takes package manager.

So, I'm pleased to announce that InterSystems ObjectScript Package Manager available!

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Article
Jimmy Xu · Nov 28, 2022 1m read
Use IntegratedML to 'predit' diseases

Hi Developers,

IntegratedML is a feature helps us and our teams easily implement machine learning (ML) without dedicated ML experts and data scientists. If you do not need particularly complex ML function, integratedML is a good choice and convenient that only requires executing 3 SQL queries to build predictive models directly from InterSystems IRIS to ML engine.

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