Article
· Dec 16, 2024 2m read
Edit your Globals with VSCode and YAML

The best way to list, edit, save and delete globals is using an IDE. Now, it is possible if you use VSCode. It is also possible to save globals using yaml files. Perform the following steps:

1. Get an InterSystems IRIS instance and install the application iris-global-yaml:

zpm:USER>install iris-global-yaml

2. If you just to want an InterSystems IRIS trial for tests git clone and run on docker:

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I am just writing something to share what I encountered last night, which is the IRIS 2024.3 does not comes with Python by default any more!!!

Which means that I need to install it by myself!!😅 The pros is, I can select my python version😁🤭💃 The trouble is.... at the first place.... I don't know what I should do😥. By going through the community (I am much more prefer than the official document, sorry InterSystems document team😓 ), I found the following piece

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I found myself in the not-so-comfortable situation of working with a Linux system on which someone had accidentally disabled user access to the Linux shell. HealthConnect was running, servicing hundreds of interfaces. To resolve the access issue, though, we needed to bring the host down for the application of a fix.

Without the shell, the iris command is not available to control the instance, so we were faced with the potential of shutting down the server ungracefully. We wanted to avoid that if possible ...

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Article
· Sep 12, 2024 7m read
Embedded python in InterSystems IRIS

Hello Community,

In this article, I will outline and illustrate the process of implementing ObjectScript within embedded Python. This discussion will also reference other articles related to embedded Python, as well as address questions that have been beneficial to my learning journey.

As you may know, the integration of Python features within IRIS has been possible for quite some time. This article will focus on how to seamlessly incorporate ObjectScript with embedded Python.

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An extension “extends” or enhances a FHIR resource or a data element in a custom way. The extension can be added to the root of a resource, such as “Patient.ethnicity” in US Core profile, and they can be added to individual elements such as HumanName, Address or Identifier.

Did you know that you can also add an extension to a primitive data type?

Primitives usually store a single item and are the most basic element in FHIR. For example: "Keren", false, 1234, 12/08/2024 etc.

For example, the patient resources might look like this:

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The rise of Big Data projects, real-time self-service analytics, online query services, and social networks, among others, have enabled scenarios for massive and high-performance data queries. In response to this challenge, MPP (massively parallel processing database) technology was created, and it quickly established itself. Among the open-source MPP options, Presto (https://prestodb.io/) is the best-known option. It originated in Facebook and was utilized for data analytics, but later became open-sourced.

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In the previous article we presented the d[IA]gnosis application developed to support the coding of diagnoses in ICD-10. In this article we will see how InterSystems IRIS for Health provides us with the necessary tools for the generation of vectors from the ICD-10 code list using a pre-trained language model, its storage and the subsequent search for similarities on all these generated vectors.

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I know that people who are completely new to VS Code, Git, Docker, FHIR, and other tools can sometimes struggle with setting up the environment. So I decided to write an article that walks through the entire setup process step by step to make it easier to get started.

I’d really appreciate it if you could leave a comment at the end - let me know if the instructions were clear, if anything was missing, or if there’s anything else you'd find helpful.

The setup includes:

✅ VS Code – Code editor
✅ Git – Version control system
✅ Docker – Runs an instance of IRIS for Health Community
✅ VS Code REST Client Extension – For running FHIR API queries
✅ Python – For writing FHIR-based scripts
✅ Jupyter Notebooks – For AI and FHIR assignments

Before you begin: Ensure you have administrator privileges on your system.

In addition to reading the guide, you can also follow the steps in the videos:

For Windows

https://www.youtube.com/embed/IyvuHbxCwCY
[This is an embedded link, but you cannot view embedded content directly on the site because you have declined the cookies necessary to access it. To view embedded content, you would need to accept all cookies in your Cookies Settings]

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Greetings dear community members!

I have recently been deploying an IRIS for Health image on a Docker with a preconfigured Webgateway image and I have come across the problem of the SSL configurations that allow us to connect to the IRIS instance using HTTPS and going through our Webgateway.

Until now I had always deployed IRIS for Health with a Community license, which still has the Private Web Server installed, so I only needed to configure the Webgateway connection with the deployed IRIS instance:

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All pods are assigned a Quality of Service (QoS). These are 3 levels of priority pods are assigned within a node.

The levels are as following:

1) Guaranteed: High Priority

2) Burstable: Medium Priority

3) BestEffort: Low Priority

It is a way of telling the kubelet what your priorities are on a certain node if resources need to be reclaimed. This great GIF below by Anvesh Muppeda explains it.

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Migrating InterSystems IRIS and InterSystems IRIS for Health from on-premises to the cloud offers many advantages for Application Providers and Solution Providers. These advantages include simplified operations, access to flexible resources, and enhanced resilience. Companies no longer need to worry about the physical constraints and expenses associated with maintaining on-prem infrastructure, such as power and space requirements and expensive computer hardware.

One of the most compelling benefits is the ability to accelerate speed to market. By removing the burden of infrastructure maintenance, cloud environments enable faster development and deployment cycles, allowing businesses to respond quickly to market demands and opportunities. Operational costs are also lowered, because companies can scale resources up or down based on actual needs, leading to more efficient use of capital. Moreover, migrating to the cloud can contribute to a reduced carbon footprint by optimizing energy usage through shared cloud infrastructure.

Transitioning to the cloud may involve significant changes. Companies may benefit from a more operational focus, managing and optimizing cloud resources continuously. This shift may require changes to business models, reconsideration of margins, and strategies for scaling operations up or out. While requiring more investment, embracing these changes can lead to improved agility and competitive advantage in the marketplace.

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I have started working on utilizing Epic on FHIR about a month ago.

Creating a Public Private Key Pair

mkdir /home/ec2-user/path_to_key
openssl genrsa -out ./path_to_key/privatekey.pem 2048

For backend apps, you can export the public key to a base64 encoded X.509 certificate named publickey509.pem using this command...

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InterSystems FAQ rubric

Temporary globals stored in the IRISTEMP/CACHETEMP databases are used when a process does not need to store data indefinitely, but requires the powerful performance of globals. The IRISTEMP/CACHETEMP databases are not journaled, so using temporary globals does not create journal files.

The system uses the IRISTEMP/CACHETEMP databases for temporary storage and are available to users for the same.

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image

Hi Community,

In this article, I will introduce my application iris-HL7v2Gen .

IRIS-HL7v2Gen is a CSP application that facilitates the dynamic generation of HL7 test messages. This process is essential for testing, debugging, and integrating healthcare data systems. The application allows users to generate a wide variety of HL7 message types, validate their structure against HL7 specifications, explore the message hierarchy, and transmit messages over TCP/IP to production systems. These features are particularly useful in settings where compliance with HL7 standards is mandatory for interoperability between different healthcare organizations or systems.


Application Features

  • Dynamic HL7 Message Generation: Instantly create HL7 messages for a range of message types, facilitating comprehensive testing.
  • Message Structure Exploration: Visualize the structure of generated messages based on HL7 specifications.
  • Value Set Visualization View predefined sets of allowable coded values for specific fields.
  • Message Validation: Validate messages against HL7 standards to ensure compliance.
  • TCP/IP Communication: Easily transmit messages to production using TCP/IP settings.
  • Broad Message Type Support: Supports 184 different HL7 message types, ensuring versatility for various healthcare integration needs.
  • ClassMethod: Generate a Test Message by Invoking a Class Method
  • Version Support: Currently Supports HL7 Version 2.5

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A benefit of using Doxygenerate is that Doxygen does more than just HTML output. Tweak the Doxyfile that tells Doxygen what to do and you can easily create a PDF. Our example MARINA application yielded a 524-page PDF. Here's what page 94 looks like:

You can browse the whole file here.

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In your Interoperability Production you could always have a Business Operation that is an HTTP client, that uses OAuth 2.0 for authentication, but you had to customize the Operation for this authentication methodology. Since v2024.3, which was lately released, there is a new capability, providing new settings, to handle this more easily.

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