Article
· Jan 28 3m read
Fhir-HepatitisC-Predict

Processing FHIR resources with FHIR SQL BUILDER to predict the probability of developing hepatitis C disease

With the development of technology, the medical industry is also constantly advancing, and humans often pay more attention to their own health,
By learning and processing datasets through computers, diseases can be predicted.

Pre condition: Ability to use FHIR and ML
Firstly, our dataset is obtained from kaggle and transformed into FHIR resources based on patient gender, age, ALP or ALT, and imported into the FHIR resource repository

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Considering new business interest in applying Generative-AI to local commercially sensitive private data and information, without exposure to public clouds. Like a match needs the energy of striking to ignite, the Tech lead new "activation energy" challenge is to reveal how investing in GPU hardware could support novel competitive capabilities. The capability can reveal the use-cases that provide new value and savings.

Sharpening this axe begins with a functional protocol for running LLMs on a local laptop.

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InterSystems FAQ rubric

If the system does not stop for 24 hours, old journal files will be deleted at 0:30 according to the "Journal file deletion settings".

A possible cause of journal files remaining that are older than the "Journal file deletion settings" is that there are transactions that remain open.

In that case, you will be able to delete the journal file by searching for processes executing transactions and finalizing the transactions.

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Hi Devs!

Recently I was impressed by @Dan Pasco's article where he shares also how he uses terminal aliases.

Terminal aliases is a very powerful tool for developers and sys admins if you often need to call some cumbersome terminal expressions and make it shorter and cleaner. Here is the documentation.
Yes!

But what about Docker environments? What if you are fan of Docker dev environments but also want to keep using your favorite aliases with Docker as well?

Turned out it is very possible.

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The ideal number of table permissions to assign for your users is zero. Permissions should be granted upon sign-in based on the application used for access. For web applications, we have a simple way of doing this by appointing application roles, matching roles, and required resources in the System Management Portal.

ODBC and JDBC connections present a different problem, however, especially when third-party applications are involved. As providers of an ERP system, our customers often wish to be able to employ various software packages to integrate with or report on their data. Many of these programs are capable of running any kind of query. Yet, letting them do that can be devastating to a customer’s data.

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IRIS can use a KMS (Key Managment Service) as of release 2023.3. Intersystems documentation is a good resource on KMS implementation but does not go into details of the KMS set up on the system, nor provide an easily followable example of how one might set this up for basic testing.

The purpose of this article is to supplement the docs with a brief explanation of KMS, an example of its use in IRIS, and notes for setup of a testing system on AWS EC2 RedHat Linux system using the AWS KMS. It is assumed in this document that the reader/implementor already has access/knowledge to set up an AWS EC2 Linux system running IRIS (2023.3 or later), and that they have proper authority to access the AWS KMS and AWS IAM (for creating roles and polices), or that they will be able to get this access either on their own or via their organizations Security contact in charge of their AWS access.

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Article
· Jan 22 2m read
Getting JSON from SQL

Did you know that you can get JSON data directly from your SQL tables?

Let me introduce you to 2 useful SQL functions that are used to retrieve JSON data from SQL queries - JSON_ARRAY and JSON_OBJECT.
You can use those functions in the SELECT statement with other types of select items, and they can be specified in other locations where an SQL function can be used, such as in a WHERE clause

The JSON_ARRAY function takes a comma-separated list of expressions and returns a JSON array containing those values.

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Article
· Jan 21 1m read
Debugging a crashing container

I have been struggling with a docker run command that kept crashing, the error message was too generic to point me to the right direction.

Since the container is shut down after the failure, I was unable to login to it in order to figure out the problem.

I had to run the container in a way that I'll be able to log into it before it crashed, so I found the adding -u false prevents the docker run command to run the iris session IRIS and the container stayed up and running. then I was able to log into it using:

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Article
· Jan 19 4m read
Querying Dynamic Data using ASQ

IRIS 2023.3.0 ASQ

Abstract Set Query, ASQ, is a super set of JSON Path Language, JPL, which was first introduced by the 2016 ISO SQL Standard. JPL is only defined within the context of SQL. In 2023.3, we introduced classes that implement ASQ. It works on any implementation of %Library.AbstractSet. The complete syntax for ASQ will be documented later. This is just a quick introduction to a few of its features. This implementation comes with a nice utility as well. You will know it when you see it!

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Last Friday November 17 suddenly ran into an error where ZPM would issue an error saying:

ERROR! Object open failed because 'Name' key value of 'xx' was not found

I googled but found no specific help. Step by step I was able to conclude that:

  1. This is the error message for error 5770, also known as $$$KeyValueNotFoundOpen.

  2. In objectscript, this error can be raised by calls to NameOpen, where 'Name' is the first quoted part in the error message.

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The Lo-Code Challenge

Imagine the scene. You are working happily at Widgets Direct, the internet's premier retailer of Widgets and Widget Accessories. Your boss has some devastating news, some customers might not be fully happy with their widgets, and we need a helpdesk application to track these complaints. To makes things interesting, he wants this with a very small code footprint and challenges you to deliver an application in less than 150 lines of code using InterSystems IRIS. Is this even possible?

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In the context of HL7 FHIR (Fast Healthcare Interoperability Resources), the terms "id" and "identifier" refer to specific elements used for identifying resources within the FHIR data model. For a newbie, these terms can be confusingly similar, but they serve distinct purposes.

Look at the below Patient resource for August T. Faulkner:

The resource has an id of “1” — generated by the FHIR server when the resource was created.
Patient August T. Faulkner also has a identifier (Medical Record Number) — possibly provided by the hospital — of 78510398960

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Article
· Jan 14 5m read
clinFHIR for developers

This article is intended to describe how the clinFHIR application can be used to help developers both understand FHIR and to develop applications that utilize FHIR artifacts. It’s not intended to be an introduction to FHIR, but rather describe how clinFHIR can help on the learning / development journey.

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With the advent of Embedded Python, a myriad of use cases are now possible from within IRIS directly using Python libraries for more complex operations. One such operation is the use of natural language processing tools such as textual similarity comparison.

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InterSystems FAQ rubric

This error occurs when an instance of the class is already open at compile time.

There are two ways to deal with this issue:

  1. Terminate the process or application that has the instance open
  2. Compile options in the studio build menu: Check the compile flag “Compile classes in use” and compile.

If you want to determine which process is using the class, try the sample routine below.

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[Background]

InterSystems IRIS family has a nice utility ^SystemPerformance (as known as ^pButtons in Caché and Ensemble) which outputs the database performance information into a readable HTML file. When you run ^SystemPerformance on IRIS for Windows, a HTML file is created where both our own performance log mgstat and Windows performance log are included.

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Hi, Community!

Since this article is an overview of Flask Login, let's begin with Flask Introduction!

What is Flask?

In the realm of web development, Python has emerged as a formidable force, offering its versatility and robustness to create dynamic and scalable applications. For that reason, tools and services compatible with this language are in demand these days. Flask is a lightweight and easy-to-use web framework for Python. It stands out as a lightweight and user-friendly option. Its simplicity and flexibility have made it a popular choice for developers, particularly for creating smaller-scale applications. It is based on the Werkzeug toolkit and provides a simple but powerful API for building web applications.
Unlike its full-stack counterparts, Flask provides a core set of features, focusing on URL routing, template rendering, and request handling. This minimalist approach makes Flask lightweight and easy to learn, allowing developers to build web applications quickly and without the burden of unnecessary complexity.

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Article
· Jan 8 9m read
IRIS Document Database (DocDB)

InterSystems IRIS Document Database (DocDB) offers a flexible and dynamic approach to managing database data. DocDB embraces the power of JSON (JavaScript Object Notation), providing a schema-less environment for storing and retrieving data.

It is a powerful tool, enables developers to bypass a ton of boiler plate code in interaction with existing applications, serialization, pagination and integration. the seamless flow of DocDB with Interoperability Rest services and operations, gives a big leap in API production and management.

for full DocDB documentation Here. in the context of this article i will showcase a use case in which DocDB will make a perfect fit.

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InterSystems FAQ rubric

If a relationship is set and there is a large number of n in a 1:n ratio, a large amount of memory may be consumed due to sequential processing of the relationship.

After referencing a many-sided object in a program and internally swizzling it, simply releasing the variable containing the OREF (deleting it, setting another value, etc.) will not free the many-sided object and the relationship object. This is the cause.

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It seems like yesterday when we did a small project in Java to test the performance of IRIS, PostgreSQL and MySQL (you can review the article we wrote back in June at the end of this article). If you remember, IRIS was superior to PostgreSQL and clearly superior to MySQL in insertions, with no big difference in queries.

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InterSystems FAQ rubric

There is no need to recompile the routines after the version upgrade, but since the version update overwrites %SYS, user-created INT and OBJ format routines (*.INT,*.OBJ) in %SYS will be deleted. Therefore, you need to be careful.

MAC, INT and OBJ routines with the following names are not deleted.

%Z*.INT, %z*.INT, Z*.INT,z*.INT
%Z*.OBJ, %z*.OBJ, Z*.OBJ,z*.OBJ

Please note that classes/CSPs need to be compiled after upgrading.

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Article
· Dec 23, 2023 1m read
Reviews on Open Exchange - #37

If one of your packages on OEX receives a review you get notified by OEX only of YOUR own package.
The rating reflects the experience of the reviewer with the status found at the time of review.
It is kind of a snapshot and might have changed meanwhile.
Reviews by other members of the community are marked by * in the last column.

I also placed a bunch of Pull Requests on GitHub when I found a problem I could fix.
Some were accepted and merged, and some were just ignored.
So if you made a major change and expect a changed review just let me know.

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