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#Python

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Python is an interpreted high-level programming language for general-purpose programming. Created by Guido van Rossum and first released in 1991, Python has a design philosophy that emphasizes code readability, notably using significant whitespace

Official site.

InterSystems Python Binding Documentation.

Article
· Dec 6, 2022 3m read
OCR DEMO

OCR DEMO

This is a demo of the OCR functionality of the pero-ocr library.

It used in the iris application server in python.

Demo

This is an example of input data :

input

This is the result of the OCR :

In this example you have the following information:

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If you are using Python, you can use the built-in venv module to create a virtual environment. This module is the recommended way to create and manage virtual environments.

A virtual environment is a tool that helps to keep dependencies required by different projects separate by creating isolated python virtual environments for them. It solves the “Project X depends on version 1.x but, Project Y needs 4.x” dilemma, and keeps your global site-packages directory clean and manageable.

So if like me you work a lot with Python, you can use the venv module to create a virtual environment for your project. This will allow you to install packages without affecting the global Python installation.

You will find here two neat alias to create and activate a virtual environment.

Python aliases

alias venv="python3 -m venv .venv; source .venv/bin/activate"
alias irisvenv="python3 -m venv .venv; source .venv/bin/activate; pip install https://github.com/grongierisc/iris-embedded-python-wrapper/releases/download/v0.0.3/iris-0.0.3-py3-none-any.whl"

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Hi Developers,

Enjoy watching the new video on InterSystems Developers YouTube:

⏯ Using Python with InterSystems IRIS @ Global Summit 2022

https://www.youtube.com/embed/CQqXkuWkHiY
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Hello everyone, this is with great pleasure that I announce the V2 of my application 'Contest-FHIR'.

In this new version, I used new tools and techniques I discovered at the EUROPEAN HEALTHCARE HACKATHON in which I was invited by InterSystems as a guest and as a mentor to display the multiple projects I did in my intership back in April 2022.

Today I present to you the V2 of my application, it can now transform CSV to FHIR to SQL to JUPYTER notebook.

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Article
· Nov 27, 2022 9m read
Easy CSV TO FHIR - InterSystems Contest

Hello everyone, I’m a French student in academical exchange for my fifth year of engineering school and here is my participation in the FHIR for Women's Health contest.

This project is supposed to be seen as the backend of a bigger application. It can be plugged into a Front End app and help you gather information from your patients. It will read your data in local and use a Data Transformation to make it into a FHIR object before sending it to the included local FHIR server.

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I have table

CREATE TABLE nodes (
        name VARCHAR(50) NOT NULL, 
        parent VARCHAR(50), 
        PRIMARY KEY (name), 
        FOREIGN KEY(parent) REFERENCES nodes (name) ON UPDATE cascade
);

I put some data

INSERT INTO nodes (name, parent) VALUES ('n1', NULL);
INSERT INTO nodes (name, parent) VALUES ('n11', 'n1');
INSERT INTO nodes (name, parent) VALUES ('n12', 'n1');
INSERT INTO nodes (name, parent) VALUES ('n13', 'n1');

Let's delete all

DELETE FROM nodes;

Nope, no way.

SQL Error [124] [S1000]: [SQLCODE: <-124>:<FOREIGN KEY constraint failed referential check upon DELETE of row in referenced table>]
[Location: <ServerLoop>]
[%msg: <At least 1 Row exists in table 'SQLUser.nodes' which references key 'NODESPKey2' - Foreign Key Constraint 'NODESFKey3', Field(s) 'parent' failed on referential action of NO ACTION>]

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I have a table, with autoincremented id

CREATE TABLE users (
    id SERIAL NOT NULL,
    name VARCHAR(30) NOT NULL,
    PRIMARY KEY (id)
)

I can add a new item there with an explicit id 

INSERT INTO users (id, name) VALUES (2, 'fred')

And while my id is autoincremented, I can omit it

INSERT INTO users (name) VALUES ('ed')

So, this time, I don't know the id, and I want to somehow get it.

I could do it with LAST_IDENTITY() function, but it just uses %RowID, and have no relation to the primary id

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   _________ ___ ____  
  |__  /  _ \_ _|  _ \ 
    / /| |_) | || |_) |
   / /_|  __/| ||  __/ 
  /____|_|  |___|_|

Starting in version 2021.1, InterSystems IRIS began shipping with a python runtime in the engine's kernel. However, there was no way to install packages from within the instance. The main draw of python is its enormous package ecosystem. With that in mind, I introduce my side project zpip, a pip wrapper that is callable from the iris terminal.

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This is not an issue in ObjectScript, due to its typeless nature. But it's essential for external programming languages that care a bit more about types of variables.

And in any case, it's still reproducible in ObjectScript. I have table

CREATE TABLE some_table (
        id INTEGER NOT NULL, 
        x INTEGER, 
        y INTEGER, 
        z VARCHAR(50), 
        PRIMARY KEY (id)
)

And data

INSERT INTO some_table (id, x, y, z) VALUES (1, 1, 2, 'z1');
INSERT INTO some_table (id, x, y, z) VALUES (2, 2, 3, 'z2');
INSERT INTO some_table (id, x, y, z) VALUES (3, 3, 4, 'z3');
INSERT INTO some_table (id, x, y, z) VALUES (4, 4, 5, 'z4');

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I am demonstrating a use case of how we can create an IRIS Interoperability Production for special use in an external language. InterSystems IRIS, within Interoperability has a framework called Production Extension (PEX), using which we can create productions and program them as per their purpose using external languages like Java, Python etc, and also develop custom inbound and outbound adapters to communicate with other applications.

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Hi folks!

How can I refer to a classmethod of the same class while coding another classmethod with Embedded python?

I know that I can call it with iris.cls(classname).MethodName(), but it's more cumbersome even comparing with ObjectScript, where I can call ..MethodName().

Compare ObjectScript:

do ..SetupGame()

and the same call in EmbeddedPython:

    iris.cls('eshvarov.sample.SeaBattle.GamePython').SetupGame()

Thoughts?

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Here you'll find a simple program that uses Python in an IRIS environment and another simple program that uses ObjectScript in a Python environment. Also, I'd like to share a few of the troubles I went trough while learning to implement this.

Python in IRIS environment

Let's say, for example, you're in an IRIS environment and you want to solve a problem that you find easy, or more efficient with Python.

You can simply change the environment: create your method as any other, and in the end of it's name and specifications, you add [ Language = python ]:

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Hi Community,


In this article, I will introduce Python Flask Web Framework. Together we will create a minimal web application to connect to IRIS and get data from it.

Below you can find the steps we will need to follow:

  • Step 1 : Introduction to Python Flask Web Framework
  • Step 2 : Installation of Flask module
  • Step 3 : Creation of web application using Flask
  • Step 4 : Use of HTML Templates
  • Step 5 : Installation of IRIS Python Native module
  • Step 6 : Establishment of a connection with IRIS
  • Step 7 : Transferring data from IRIS to Flask and displaying it

So Let's start with step 1

Step1-Introduction to Python Flask Web Framework

Flask is a small and lightweight Python web framework that provides useful tools and features that make creating web applications in Python easier. It gives developers flexibility and is a more accessible framework for new developers since it allows to build a web application quickly using only a single Python file. Flask is also extensible and doesn’t requires a particular directory structure or complicated boilerplate code before getting started.


For more details please view Flask Documentations

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Hello everyone, I’m a French student that just arrived in Prague for an academical exchange for my fifth year of engineering school and here is my participation in the interop contest.

I hadn’t much time to code since I was moving from France to Prague and I’m participating alone, so I decided to make a project that’s more like a template rather than an application.

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I'm after some more in-depth information about how the embedded python is implemented with regards to how it works when a python method is called from a CSP page. Will it run in the same Windows process? Will there be any issues with multitasking (considering python doesn't seem very good at this)?

Also, is there a performance penalty to pay for running embedded python vs "using IRIS APIs from Python".

Another question is what python interpreter the embedded python is using? Is it an Intersystems one or the regular c.python? Version?

Excited to go Python!

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Hi everyone!

I am recruiting on a fully remote Intersystems Developer. This role will be a long term contract to begin with high likelihood of extensions or conversion permanent. Please check out the job description down below and feel free to send me an email with your resume: Spencer.Frey@insightglobal.com

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In this GitHub we gather information from a csv, use a DataTransformation to make it into a FHIR object and then, save that information to a FHIR server all that using only Python.

The objective is to show how easy it is to manipulate data into the output we want, here a FHIR Bundle, in the IRIS full Python framework.

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In this GitHub we fine tune a bert model from HuggingFace on review data like Yelp reviews.

The objective of this GitHub is to simulate a simple use case of Machine Learning in IRIS :
We have an IRIS Operation that, on command, can fetch data from the IRIS DataBase to train an existing model in local, then if the new model is better, the user can override the old one with the new one.
That way, every x days, if the DataBase has been extended by the users for example, you can train the model on the new data or on all the data and choose to keep or let go this new model.

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Hey Developers,

Don't miss this hands-on session hosted by @Don Woodlock, Vice President of InterSystems Healthcare:

⏯ Machine Learning 201 - Neural Networks and Image Recognition

https://www.youtube.com/embed/lDRemLwc_U4
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Hey Developers,

Enjoy watching the new video on InterSystems Developers YouTube channel:

⏯ What is Embedded Python

https://www.youtube.com/embed/X84TSf1u9DY
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On this GitHub you can find all the information on how to use a HuggingFace machine learning / AI model on the IRIS Framework using python.

1. iris-huggingface

Usage of Machine Learning models in IRIS using Python; For text-to-text, text-to-image or image-to-image models.

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