Article
· Nov 20, 2023 3m read
Parquet files and InterSystems IRIS

In the world of Big Data, selecting the right file format is crucial for efficient data storage, processing, and analysis. With the massive amount of data generated every day, choosing the appropriate format can greatly impact the speed, cost, and accuracy of data processing tasks. There are several file formats available, each with its own set of advantages and disadvantages, making the decision of which one to use complex. Some of the popular Big Data file formats include CSV, JSON, Avro, ORC, and Parquet.

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Introduction

This article aims to explore how the FHIR-PEX system operates and was developed, leveraging the capabilities of InterSystems IRIS.

Streamlining the identification and processing of medical examinations in clinical diagnostic centers, our system aims to enhance the efficiency and accuracy of healthcare workflows. By integrating FHIR standards with InterSystems IRIS database Java-PEX, the system help healthcare professionals with validation and routing capabilities, ultimately contributing to improved decision-making and patient care.

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We recently moved from using the Private Web Server, to using an Apache/Web Gateway setup and moved towards using the built in LDAP functionality within IRIS. Since then, we have 1 user that uses VSCode (/api/atelier) heavily that continues to have issues signing into IRIS through VS Code and the /api/atelier extension.

I am trying to troubleshoot two issues..

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The new $system.external interface (aka "InterSystems External Servers") is used to call/integrate with external language code/libraries, it replace the old gateways (for example Java gateway) that required the import of proxy objects.

Note that the documentation for the old gateways has been removed from IRIS, so only the new $system.external interface is somewhat (i.e. insufficiently) documented.

Regarding the migration from old gateway to new $system.external interface the documentation says:

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Hi Developers,

We'd like to highlight some outstanding projects created during the European Healthcare Hackathon 2023 in Prague.

Participants were presented with nine real-world healthcare challenges by IKEM and AstraZeneca.
InterSystems introduced to the participants an opportunity to use the FHIR repository and perform FHIR availability into their solutions by providing FHIR cloud services on AWS.

Meet the winners of our challenge:

1st place Čarodějové (PathoSync)

"The PathoSync software is a solid base for complex pathologist platforms. With the use of custom mapping, any laboratory can project their data into FHIR7 standard, which soon will be mandatory worldwide. This makes the digitalization process smoother. The connection with InterSystems assures quality and implements many healthcare features. Furthermore, the GDPR norms are strictly followed using the FHIR server based in Europe, so the usage of software follows the European standards."

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InterSystems FAQ rubric

To resolve the error <PROTECT>, remove the read-only attribute of the system-wide library database (IRISLIB for InterSystems IRIS, CACHELIB for Caché/Ensemble/HealthShare (Caché-based))

Once you have finished importing the routine, remember to change it back to read-only.

[Version 2013.1 and above]
[Management Portal] > [System Administration] > [Configuration] > [System Configuration] > [Local Database] Uncheck "Mount read-only" from the database name link.

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Article
· Aug 16, 2023 11m read
Http request response time monitoring

Hi developers!

Today I would like to address a subject that has given me a hard time. I am sure this must have been the case for quite a number of you already (so-called “the bottleneck”). Since this is a broad topic, this article will only focus on identifying incoming HTTP requests that could be causing slowness issues. I will also provide you with a small tool I have developed to help identify them.

Our software is becoming more and more complex, processing a large number of requests from different sources, be it front-end or third-party back-end applications. To ensure optimal performance, it is essential to have a logging system capable of taking a few key measurements, such as the response time, the number of global references and the number of lines of code executed for each HTTP response. As part of my work, I get involved in the development of EMR software as well as incident analysis. Since user load comes mostly from HTTP requests (REST API or CSP application), the need to have this type of measurement when generalized slowness issues occur has become obvious.

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I have a message class define. But sometimes the RelatedItems fields is not returned.

Parameter %JSONIGNOREINVALIDFIELD As BOOLEAN = 1;

Property RequestedTerm As AH.AHLIB.Custom.Symedical.Message.PostRelationResponse.termsRequested;

Property RelatedItems As list Of AH.AHLIB.Custom.Symedical.Message.PostRelationResponse.RelatedItems;

Respnse normally will return someting like this,

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Scenario

IRIS has the likes of SQL inbound adapters for use with SQL gateways such as EnsLib.SQL.InboundAdapter to repeatedly query SQL Gateway connections. A scenario appeared as that we wanted to query an Internal database for some data but did not see an out of the box service for this.

Desired Approach

Have a Generic service that can poll internal SQL to work with downstream components.

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Artificial intelligence is not limited only to generating images through text with instructions or creating narratives with simple directions.

You can also make variations of a picture or include a special background to an already existing one.

Additionally, you can obtain the transcription of audio regardless of its language and the speed of the speaker.

So, let's analyze how the file management works.

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Windows Subsystem for Linux (WSL) is a feature of Windows that allows you to run a Linux environment on your Windows machine, without the need for a separate virtual machine or dual booting.

WSL is designed to provide a seamless and productive experience for developers who want to use both Windows and Linux at the same time**.

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Hello,

I have created a service in Node.js which interacts with IRIS using APIs. The current implementation uses basic auth. I want to implement OAuth 2, to make the communication between the node.js service and IRIS secure. I want my service to act as client and IRIS as Authorization and Resource server. I don't know how to do that. Anyone who has implemented OAuth using IRIS can you help me out or point me in the right direction on about how to implement it?

Thank you for your help :)

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Hi Community,

We are trying to filter message created using custom xml class in a business rule.

HL7 ORU Result messages are converted to custom xml messages with a list properties .Result ORU converted to OrderResultMsg , which contains property Orders as list of Order which contains ResultStatus . Please see below the class extract. We are trying to access the ResultStatus property to filter non-final results via business rule.

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I am often asked by customers, vendors or internal teams to explain CPU capacity planning for large production databases running on VMware vSphere.

In summary there are a few simple best practices to follow for sizing CPU for large production databases:

  • Plan for one vCPU per physical CPU core.
  • Consider NUMA and ideally size VMs to keep CPU and memory local to a NUMA node.
  • Right-size virtual machines. Add vCPUs only when needed.

Generally this leads to a couple of common questions:

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What changes are to be made while customizing a FHIR server package when adding a new field. As provided in the documentation, we have a sample JSON package of favorite color and it is added in the table, but when we are adding a new field 'Insurance', it does not imports the package and says package already exists. We have three files of JSON

1) Package.JSON

2) SearchParameter.JSON

3) StructureDefination.JSON

What should we have to change for adding new field.

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Hey Developers,

Start watching the new video on InterSystems Developers YouTube:

Using Embedded Python as a Jupyter Notebook Server @ Global Summit 2023

https://www.youtube.com/embed/77oPUfltu0o
[This is an embedded link, but you cannot view embedded content directly on the site because you have declined the cookies necessary to access it. To view embedded content, you would need to accept all cookies in your Cookies Settings]

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Article
· May 22, 2023 6m read
Recovering a Mirror after crash

Here we are again with an article related to the Mirror!

In the previous article we saw how we could configure a Mirror between two IRIS instances, one acting as an active node and the other as a passive one. This mirroring system works on the transfer of a journal file that keeps the instance that works as a passive node continuously updated, but what happens if due to some communication failure or permissions of the journal file it is not transferred correctly?

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Hello all,

I am trying to start java gateway and constantly getting an error in terminal:
"%RemoteService+3^%Net.Remote.Gateway.1 *%Exception.StatusException ERROR #5023: Remote Gateway Error: TCP error on port '55555', ensure there is an Object Gateway running on this port". I've checked jvm and it is running properly, telnet also is able to connect to the port.

Has anyone encountered this issue before?

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Question
· Nov 17, 2023
Testing OAuth2

I am attempting to setup my first OAuth2 client, as we are adventuring into the realm of making FHIR API calls to our EMR from HealthShare Health Connect.

I have gone through and set up the Issuer Endpoint, and Client Configuration but now I want to test it and verify that the setup is correct. When I setup the Client Configuration, it would not allow me to use Discovery as it was saying I needed a "Client secret" but was not given one. So I set it up manually, thinking I hit all the information correctly.

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Trying to setup my first OAuth 2 client to authenticate against Epic's Interconnect instance that is hosting FHIR/Web Service API's. Epic's documentation says the JWT request has to be sent as a POST request..

Does

GetAuthorizationCodeEndpoint

and

GetImplicitEndpoint

automatically put the request into a POST request, or do I need to format a %Net.HttpRequest to POST?

Thanks

Scott

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