The objective of the article is to provide the reader with the following informations:

  • Configure and use the FHIR server
  • Create an OAuth2 Authorization Server
  • Bind the FHIR server to the OAuth2 Authorization Server for support of SMART on FHIR
  • Use the interoperability capabilities of IRIS for Health to filter FHIR resources
  • Create a custom operation on the FHIR server

Schema of the article:

Schema

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I'm proud to announce the new release of iris-pex-embedded-python (v2.3.1) with a new command line interface.

This command line is called iop for Interoperability On Python.

First I would like to present in few words the project the main changes since the version 1.

A breif history of the project

Version 1.0 was a proof of concept to show how the interoperability framework of IRIS can be used with a python first approach while remaining compatible with any existing ObjectScript code.

What does it mean? It means that any python developer can use the IRIS interoperability framework without any knowledge of ObjectScript.

Example :

from grongier.pex import BusinessOperation

class MyBusinessOperation(BusinessOperation):

    def on_message(self, request):
        self.log.info("Received request")

Great, isn't it?

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Article
· Mar 24 8m read
Python BPL in preview

BPL from 10,000 feet

BPL stands for Business Process Language.
This is an XML format for describing complex information orchestration interactions between systems.
InterSystems Integration engine has for two decades, provided a visual designer to build, configure, and maintain, BPL using a graphical interface.
Think of it like drawing a process flow diagram that can be compiled and deployed.

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I have an existing Python script that opens a child session using the pexpect library. But currently all it does is send hard-coded commands to the Cache process and expect a hard-coded response back in order to continue in the script.

I would like to run a Cache routine from the script, pass in a parameter, and wait for a response that will be different every time (a date, in this case). So the call would be something like D $$Tag^Routine(parameter) and wait for the routine to complete and return the response.

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I have challenged to create a bot application using Azure Bot that can retrieve and post data to IRIS for Health.

A patient's data has already been registered in the FHIR repository of IRIS for Health.

The patient's MRN is 1001. His name is Taro Yamada. (in Japanese :山田 太郎)

This bot can post new pulse oximeter readings as an observation resource linked to the patient.

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Article
· Jul 7, 2023 8m read
Iris FHIR Python Strategy

Description

With InterSystems IRIS FHIR Server you can build a Strategy to customize the behavior of the server (see documentation for more details).

Image

This repository contains a Python Strategy that can be used as a starting point to build your own Strategy in python.

This demo strategy provides the following features:

  • Update the capability statement to remove the Account resource
  • Simulate a consent management system to allow or not access to the Observation resource
    • If the User has sufficient rights, the Observation resource is returned
    • Otherwise, the Observation resource is not returned
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Why should you connect Flask to InterSystems IRIS?

The first thing that comes to mind when we think about combining Flask with IRIS is a portal to interact with your clients and partners. A good example would be a website for patients to access their clinical exams. Of course, this case would require a whole new layer of security, which we did not cover in our last article. However, we can effortlessly add it with Werkzeug, for instance.

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Introduction

A password manager is an important security tool that allows users to store and manage their passwords without the need to remember or write them down in insecure places. In this article, we will explore the development of a simple password manager using the Flask framework and the InterSystems IRIS database.

Key Features

Our password manager application will provide the following key features:

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Hello Community,

SQL language remains the most practical way to retrieve information stored in a database.

The JSON format is very often used in data exchange.

It is therefore common to seek to obtain data in JSON format from SQL queries.

Below you will find simple examples that can help you meet this need using ObjectScript and Python code.

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All,

I've asked my teammate to open a WRC on this issue, but wanted to open the discussion to see if maybe we aren't the first people to see this issue.

The code we are deploying is a COS object with some Python methods. The code works fine locally on the developer's machine. However, when the business process runs in the server environment, we see the following when COS code attempts to call a [Language = python] method:

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Question
· Jul 28, 2023
IRISPIP Cryptodome C++ Error

Hello,

I need AES ECB with PKSC7 padding for an interface.
Unfortunately, the %SYSTEM.Encryption.AESEncode cannot do this.

Therefore I wanted to include the following python lib.
PyCrptydome -> https://pycryptodome.readthedocs.io/en/latest/index.html

We need to install the package offline on the system. So I downloaded it and put it in the MGR/Python/ directory.

However, when I try to install it, I get the following error message:

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Article
· Nov 24, 2023 4m read
A framework yes, but a suitable framework

How can IRIS productions be deployed more quickly and with greater peace of mind?

The aim of interoperability productions is to enable you to connect systems in order to transform and route messages between them. To connect systems, you develop, configure, deploy and manage productions that integrate several software systems.

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We have a yummy dataset with recipes written by multiple Reddit users, however most of the information is free text as the title or description of a post. Let's find out how we can very easily load the dataset, extract some features and analyze it using features from OpenAI large language model within Embedded Python and the Langchain framework.

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Introduction

As the health interoperability landscape expands to include data exchange across on-premise as well as hosted solutions, we are seeing an increased need to integrate with services such as cloud storage. One of the most prolifically used and well supported tools is the NoSQL database DynamoDB (Dynamo), provided by Amazon Web Services (AWS).

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Our objective

In the last article, we talked about a few starters for Django. We learned how to begin the project, ensure we have all the requisites, and make a CRUD. However, today we are going a little further.
Sometimes we need to access more complex methods, so today, we will connect IRIS to a Python environment, build a few functions and display them on a webpage. It will be similar to the last discussion, but further enough for you to make something new, even though not enough to feel lost.

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Django, a high-level web framework written in Python, has become a staple for developers seeking a robust, efficient, and easy-to-learn solution for building web applications. Its popularity stems from its versatility, offering developers an efficient toolkit for building web applications. Integrating Django with InterSystems IRIS introduces a dynamic synergy, providing developers with a comprehensive web development and database management solution. That's why on the Ideas Portal, @Evgeny Shvarov suggested that having Examples to work with IRIS from Django would be beneficial. In this article, we'll explore two projects created to answer the posted idea — Django-iris by @Dmitry Maslennikov and Iris-size-django by @Heloisa Paiva.

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I want to connect IRIS system as it has all the database tables. on top of that I am creating a REST API in python. How can I connect to IRIS DB. here is my example code for connection

def connect():

connection_string = "localhost:1972/USER"

username = "_SYSTEM"

password = "SYS"

conn = iris.connect(connection_string, username, password)

after this connection is created but how can I get tables data. Please let me know more about how we can integrate IRIS database into a python REST API.

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Hi Developers!

Here're the technology bonuses for the InterSystems Vector Search, GenAI, and ML contest 2024 that will give you extra points in the voting:

  • Vector Search usage - 5
  • IntegratedML usage - 3
  • Embedded Python - 3
  • LLM AI or LangChain usage: Chat GPT, Bard, and others - 3
  • Questionnaire - 2
  • Docker container usage - 2
  • ZPM Package deployment - 2
  • Online Demo - 2
  • Implement InterSystems Community Idea - 4
  • Find a bug in Vector Search, or Integrated ML, or Embedded Python - 2
  • First Article on Developer Community - 2
  • Second Article On DC - 1
  • First Time Contribution - 3
  • Video on YouTube - 3
  • Suggest a new idea - 1

See the details below.<--break->

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image
Hello to all developers and IRIS users.
I am submitting to the competition a project for an alternative IRIS management portal that I have long wanted to create. The project was implemented on the Django framework and the intersystems_irispython-3.2.0-py3-none-any.whl library using native IRIS. The Django project is integrated with the telegram messenger and can be launched from a docker container or directly.

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In the ever-evolving landscape of data science and machine learning, having the right tools at your disposal can make all the difference. In this article, we want to shine a spotlight on two essential Python libraries that have become indispensable for data scientists and machine learning practitioners alike: Matplotlib and scikit-learn.

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