Introduction

In my previous article, I introduced the FHIR Data Explorer, a proof-of-concept application that connects InterSystems IRIS, Python, and Ollama to enable semantic search and visualization over healthcare data in FHIR format, a project currently participating in the InterSystems External Language Contest.

In this follow-up, we’ll see how I integrated Ollama for generating patient history summaries directly from structured FHIR data stored in IRIS, using lightweight local language models (LLMs) such as Llama 3.2:1B or Gemma 2:2B.

The goal was to build a completely local AI pipeline that can extract, format, and narrate patient histories while keeping data private and under full control.

All patient data used in this demo comes from FHIR bundles, which were parsed and loaded into IRIS via the IRIStool module. This approach makes it straightforward to query, transform, and vectorize healthcare data using familiar pandas operations in Python. If you’re curious about how I built this integration, check out my previous article Building a FHIR Vector Repository with InterSystems IRIS and Python through the IRIStool module.

Both IRIStool and FHIR Data Explorer are available on the InterSystems Open Exchange — and part of my contest submissions. If you find them useful, please consider voting for them!

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Introduction

In a previous article, I presented the IRIStool module, which seamlessly integrates the pandas Python library with the IRIS database. Now, I'm explaining how we can use IRIStool to leverage InterSystems IRIS as a foundation for intelligent, semantic search over healthcare data in FHIR format.

This article covers what I did to create the database for another of my projects, the FHIR Data Explorer. Both projects are candidates in the current InterSystems contest, so please vote for them if you find them useful.

You can find them at the Open Exchange:

In this article we'll cover:

  • Connecting to InterSystems IRIS database through Python
  • Creating a FHIR-ready database schema
  • Importing FHIR data with vector embeddings for semantic search

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Hi everyone! 👋
I’m excited to share the project I’ve submitted to the current InterSystems .Net, Java, Python, and JavaScript Contest — it’s called IRIStool and Data Manager, and you can find it on the InterSystems Open Exchange and on my GitHub page.

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Table of Contents

  1. Purpose of the article
  2. What containers are and why they make sense with IRIS
     2.1 Containers and images in a nutshell
     2.2 Why containers are useful for developers
     2.3 Why IRIS works well with Docker
  3. Prerequisites
  4. Installing the InterSystems IRIS image
     4.1 Using Docker Hub
     4.2 Pulling the image
  5. Running the InterSystems IRIS image
     5.1 Starting an IRIS container
     5.2 Checking container status
     5.3 Executing code in the container terminal
     5.4 Accessing the IRIS Management Portal
     5.5 Connecting the container to VS Code
     5.6 Stopping or removing the container
     5.7 Setting a specific password with a bind mount
     5.8 Using durable %SYS volumes
      5.8.1 What gets stored with durable %SYS
      5.8.2 How to enable durable %SYS
  6. Using Docker Compose
     6.1 Docker Compose example
     6.2 Running Docker Compose
  7. Using a Dockerfile to run custom source code
     7.1 Dockerfile example
     7.2 Docker Compose example
     7.3 Understanding layers, image tagging and build vs. run time
     7.4 Source code and init script
     7.5 Building the image with Dockerfile
     7.6 Running instructions in the containerized IRIS terminal
  8. Conclusion and what’s next

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Recently, I replaced my old laptop with a new one and had to migrate all my data. I was looking for a guide but couldn’t find anything that explained in detail how to migrate server connections from InterSystems Studio and Visual Studio Code from one PC to another. Simply reinstalling the tools is not enough, and migrating all the connections manually seemed like a waste of time. In the end, I managed to solve the problem, and this article explains how.

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Hello everybody,

I would like to export project contents using Visual Studio Code, as well as I do with InterSystems Studio.

However, while attempting the export through the InterSystems extension I get the following error:

- There are no folders in the current workspace that code can be exported to.

These are the step to reproduce my error:

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Hi everybody,

I'm modifying a REST interface for a client but it seems impossible to me to modify HTTP Response Status and including custom HTTP Headers either.

My dispatch class (extending %CSP.REST) is contacted through a POST request and the latter is processed in a custom class (extending %CSP.REST as well) accessed as shown in the example below:

<Route Url="/test" Method="POST" Call="Custom.Test:Process" />

Within the processing class I tried executing the following statements with no success:

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Question
· Sep 11, 2024
Determine Job/Process State

Hi, I'm working on a large extraction from a database and need to parallelize the processes during the extraction.

Here's what happens:

  1. The user starts the extraction from.
  2. Several jobs are started using the Job <Method> instruction.

At the end, the user expects to find a document containing the results of all the extractions. What I'd like to do is start a new job that checks whether the previously started jobs have finished or are still working and consequently produce the document.

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Hello everyone,

Recently, I've been working on a Business Process that processes a large JSON FHIR message containing up to 50k requests in an array within the JSON.

Currently, the code imports the JSON as a dynamic object from the original message stream, obtains an iterator from it, and processes each request one at a time in a loop.

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Hello everybody,

I've been experimenting with Embedded Python and have been following the steps outlined in this documentation: https://docs.intersystems.com/irislatest/csp/docbook/DocBook.UI.Page.cls...

I'm trying to convert a python dictionary into an objectscript array but there is an issue with the 'arrayref' function, that is not working as in the linked example.

This is a snapshoot of my IRIS terminal:

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Hi everyone,

Does anyone know how to export projects via VSC?

I opened the project through the "InterSystems Tools" plugin (command is "Edit Code in Project") and I can correctly work on it.

However, when I try using the "ObjectScript" plugin to export the project (right click on the project -> "Export Project Contents")

This message appears and it is not possible to export the project:

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Introduction

Since InterSystems has recently announced the discontinuation of support for InterSystems Studio starting from version 2023.2 in favor of exclusive development of extensions for the Visual Studio Code (VSC) IDE, believing that the latter offers a superior experience compared to Studio, many of us developers have switched or are beginning to use VSC. Many may have wondered how to open the Terminal to perform operations, as VSC does not have an Output panel like Studio did, nor an integrated feature to open the IRIS terminal, except by downloading the plugins developed by InterSystems.

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Hi everyone,

today I'm asking your help with an issue related to the response messages sent from my production to a client software, such as Postman or SoapUI.

Issue

In the last few days I've been unable to view the responses received from my production in Postman, even if I was able to do so earlier. I'm sending the request to a remote server reachable via a Putty tunnel.

Postman Test

I'm currently testing this simple POST message:

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Hi everyone,

I'm attempting to compile a basic Python code on a remote server, but it appears that the compiler doesn't recognize the language.

The remote server is running a virtual machine with Oracle Linux Server 7.9 (64-bit), and it has IRIS for UNIX (Red Hat Enterprise Linux for x86-64) 2021.1 (Build 215U) [HealthConnect:3.3.0] installed.

When I try to compile a script that includes a Python ClassMethod, such as this "testpy.cls":

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