New post

My use case is I want AI to extract six pieces of key information from medical visit notes.

It works okay with notes from Epic patient portals. I am struggling with one of my own visit Summaries. So far I have not been able to instruct ollama to give me a JSON response where it gave me what I am asking for.

My original medical_progress_notes_prompt was:

Medical progress note:
---
(document)
---

You are an expert in analyzing medical progress notes. Please carefully read the provided progress note above and extract the following key information:

0 1
0 42

I am brand new to using AI. I downloaded some medical visit progress notes from my Patient Portal. I extracted text from PDF files. I found a YouTube video that showed how to extract metadata using an OpenAI query / prompt such as this one:

ollama-ai-iris/data/prompts/medical_progress_notes_prompt.txt at main · oliverwilms/ollama-ai-iris

0 0
0 57

I cloned iris-rag-demo from Open Exchange and issued docker-compose up -d. I went to the front end and type in the chat message:

Who was the 46th President of United States of America?

I got a run time error:

RuntimeError: ERROR <Ens>ErrBPTerminated: Terminating BP ChatProcess # due to error: ERROR #5002: ObjectScript error: <PYTHON EXCEPTION> *<class 'RuntimeError'>: <PYTHON EXCEPTION> <class 'ValueError' > ERROR #5002: ObjectScript error: <PYTHON EXCEPTION> *<class 'RuntimeError'

Traceback:

0 0
0 32

I deployed an IRIS REST application using Installer class. I think I created the namespace FEEDER database with %DB_Default resource and I used the same resource in Web Application roles. I allowed Unauthenticated Authentication method. I used ^%ISCLOG and reviewed ^ISCLOG. I do not understand why I get 403 Forbidden response.

0 4
0 47

I inherited some legacy MUMPS / ObjectScript code. A code review identified an exclusive NEW and that is not allowed per our coding standards.

The original code contains:

RUN(CALL,DRVNAME)
S $EC=""
S ^TMP($J,"RMPV","DRVNAME")=DRVNAME
N TMPFILE,OLDIO
S OLDIO=$IO
I $G(^TMP("RMPV","SILENT"),1) S IOP="NULL",%ZIS=0 D ^%ZIS I '$G(POP,1) U IO
D INIT^@DRVNAME
D ; scope variables
.N (DUZ,CALL) ; Protect %response
.S IOF="""""",IOM=80,U="^"
.D @CALL
U OLDIO
Q

0 3
0 100

I am trying to work with Epic on FHIR. Epic's documentation stated, your application makes a HTTP POST request to the authorization server's OAuth 2.0 token endpoint to obtain access token.

Set tSC = ##class(%SYS.OAuth2.Authorization).GetAccessTokenClient(pClient,pScopes,.prop,.err) returns

ERROR #9761: No key in provided JWKS for alg ES512 and kid

I check this /csp/sys/oauth2/OAuth2.JWTServer.cls?client_name=medbank and I see this:

0 1
0 60

I have started working on utilizing Epic on FHIR about a month ago.

Creating a Public Private Key Pair

mkdir /home/ec2-user/path_to_key
openssl genrsa -out ./path_to_key/privatekey.pem 2048

For backend apps, you can export the public key to a base64 encoded X.509 certificate named publickey509.pem using this command...

Open Exchange app
5 2
2 289

I finally figured out how to get JWT token using set x = ##class(%SYS.OAuth2.Authorization).GetAccessTokenClient("medbank","openid fhirUser",.prop,.err).

I also found iris-fhir-client app on Open Exchange. I registered Epic sandbox server, but I cannot list resources. I suspect I need to integrate authorization / authentication. How do I do this with irisfhirclient py?

2 1
0 98
Question
· Nov 19, 2024
How to create a signed JWT

I need to create a JWT to connect to EPIC FHIRserver sandbox.

https://fhir.epic.com/Documentation?docId=oauth2&section=BackendOAuth2Guide

You will generate a one-time use JSON Web Token (JWT) to authenticate your app to the authorization server and obtain an access token that can be used to authenticate your app's web service calls. There are several libraries for creating JWTs. See jwt.io for some examples.

0 5
0 185

What is the reason for

RUN apt-get update && apt-get install -y \
git \
nano \
python3-opencv \
sudo && \
/bin/echo -e ${ISC_PACKAGE_MGRUSER}\\tALL=\(ALL\)\\tNOPASSWD: ALL >> /etc/sudoers && \
sudo -u ${ISC_PACKAGE_MGRUSER} sudo echo enabled passwordless sudo-ing for ${ISC_PACKAGE_MGRUSER}

I think I get error because I do not have sudo privilege in the environment where I use podman to build the image

podman build --tag oliver3 .

0 0
0 128

I want to try out iris-DataViz app to visualize my own data. I cloned the repo and docker-compose up -d in AWS. IRIS portal works, but on port 8051 I get nothing. I checked my AWS security groups. I reversed IRIS webserver port and 8051 and I can connect to Management portal using port 8051. I don't understand what is refusing connection on port 8051 running in iris-DataViz container.

0 1
0 83
Question
· Sep 19, 2024
Input Redirection

Hello, I try to develop a REST interface where I need to interact with legacy MUMPS routines. How can I pass in input to a Read without modifying the legacy code?

I think in linux I can execute command < inputfile to read from file, but how does it work in ObjectScript?

0 7
0 218