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#InterSystems IRIS for Health

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InterSystems IRIS for Health™ is the world’s first and only data platform engineered specifically for the rapid development of healthcare applications to manage the world’s most critical data. It includes powerful out-of-the-box features: transaction processing and analytics, an extensible healthcare data model, FHIR-based solution development, support for healthcare interoperability standards, and more. All enabling developers to realize value and build breakthrough applications, fast. Learn more.

Background

In 2021, I participated as an InterSystems mentor in a hackathon, where a newcomer to FHIR asked me if there was a tool to transform generic JSON data containing basic patient information into FHIR format. I informed her that I didn't know anything like that, unfortunately.

But that idea stays in my mind...

Several months later, in 2022, I came up with an idea to experiment: to train a named entity recognition (NER) to identify FHIR elements into generic texts. The training involved synthetic FHIR data generated by Synthea and the spaCy Python library.

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InterSystems FAQ rubric

This error occurs when an instance of the class is already open at compile time.

There are two ways to deal with this issue:

  1. Terminate the process or application that has the instance open
  2. Compile options in the studio build menu: Check the compile flag “Compile classes in use” and compile.

If you want to determine which process is using the class, try the sample routine below.

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Article
· Feb 1 2m read
Mind map your FHIR patient data

According Wikipedia a mind map is a diagram used to visually organize information into a hierarchy, showing relationships among pieces of the whole. It is often created around a single concept, drawn as an image in the center of a blank page, to which associated representations of ideas such as images, words and parts of words are added. Major ideas are connected directly to the central concept, and other ideas branch out from those major ideas.

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Overview

In our previous post, we discussed the motivation for developing a chatbot agent with access to FHIR resources. In this post, we will dive into the high-level design aspects of integrating a Streamlit-based chat interface with a Java SpringBoot backend, and enabling a LangChain agent with access to FHIR (Fast Healthcare Interoperability Resources) via APIs.

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Do you ever spend an age entering criteria in the message viewer page, trying to find a message just to realise you're in the wrong instance of IRIS?

Or get lost in a sea of message tabs struggling to spot that Visual Trace page your were JUST looking at?

Well, have you tried the IRIS WHIZ browser extension and its suite of tools designed to help you avoid such unpleasantness?

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I have been walking through this with a few team members and as such I thought there might be others out there who could use it, especially if you work with HL7 & Ensemble/HealthConnect/HealthShare and never venture out past the Interoperability section.

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IRIS can use a KMS (Key Managment Service) as of release 2023.3. Intersystems documentation is a good resource on KMS implementation but does not go into details of the KMS set up on the system, nor provide an easily followable example of how one might set this up for basic testing.

The purpose of this article is to supplement the docs with a brief explanation of KMS, an example of its use in IRIS, and notes for setup of a testing system on AWS EC2 RedHat Linux system using the AWS KMS. It is assumed in this document that the reader/implementor already has access/knowledge to set up an AWS EC2 Linux system running IRIS (2023.3 or later), and that they have proper authority to access the AWS KMS and AWS IAM (for creating roles and polices), or that they will be able to get this access either on their own or via their organizations Security contact in charge of their AWS access.

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Article
· Jan 31 2m read
What is iris-hl7?

An App that converts HL7 messages to JSON objects. About a year ago I started a GitHub repo for collecting stuff related to HL7. Recently my team added an HL7 interface to our Interoperability Production and we were asked to persist HL7 messages. We created a Kafka topic to receive HL7 messages. We use Kafka Bridges to send messages to Kafka topics. Kafka messages are sent to the Kafka Bridge in JSON format.

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Article
· Jan 28 3m read
Fhir-HepatitisC-Predict

Processing FHIR resources with FHIR SQL BUILDER to predict the probability of developing hepatitis C disease

With the development of technology, the medical industry is also constantly advancing, and humans often pay more attention to their own health,
By learning and processing datasets through computers, diseases can be predicted.

Pre condition: Ability to use FHIR and ML
Firstly, our dataset is obtained from kaggle and transformed into FHIR resources based on patient gender, age, ALP or ALT, and imported into the FHIR resource repository

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Article
· Jan 21 1m read
Debugging a crashing container

I have been struggling with a docker run command that kept crashing, the error message was too generic to point me to the right direction.

Since the container is shut down after the failure, I was unable to login to it in order to figure out the problem.

I had to run the container in a way that I'll be able to log into it before it crashed, so I found the adding -u false prevents the docker run command to run the iris session IRIS and the container stayed up and running. then I was able to log into it using:

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Hi Community

This document mainly enriches the content of the previous article and introduces the use of the application.

Perhaps you have already read the previous article, but I still want to say,
After completing the initialization operation (including model creation and training), the Fhir HepatitisC Predict application then predicts HepatitisC

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The InterSystems IRIS has a series of facilitators to capture, persist, interoperate, and generate analytical information from data in XML format. This article will demonstrate how to do the following:

  1. Capture XML (via a file in our example);
  2. Process the data captured in interoperability;
  3. Persist XML in persistent entities/tables;
  4. Create analytical views for the captured XML data.

Capture XML data

The InterSystems IRIS has many built-in adapters to capture data, including the next ones:

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1、Background

When I first encountered FHIR, I encountered a problem with its message format. It was difficult for me to determine whether the message I created met the format, and it was also difficult to easily create an FHIR message from scratch.

So, through fhir server of IntereSystems’fhirserver API, I created this application for quickly generating/validating FHIR messages.

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For some time I have been planning to do some type of proof of concept with the Workflow functionality, which, like so many other functionalities present in IRIS, tends to go quite unnoticed by our clients (and for which I say mea culpa). That's why I decided a few days ago to develop an example of how to configure and exploit this functionality by connecting it with a user interface developed in Angular.

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