Have you had a look at %RoutineIndex::RebuildIndex? The documentation suggests this does what you want: https://docs.intersystems.com/irisforhealthlatest/csp/documatic/%25CSP.D.... It should be available in the version of Ensemble you're running.
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You can also set this at a workspace or user level by going into Settings -> Extensions -> InterSystems ObjectScript and updating the "ObjectScript Compile Flags" setting:
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