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I think the problem is that it is not re-compiling after change, because the code doesn't change. Below is what I get when changing a comment.

Compilation started on 10/05/2022 11:37:01 with qualifiers 'cuk'
Class Custom.Utility.Functions is up-to-date.
Compilation finished successfully in 0.002s.

FYI, its not an issue for me anymore. I've been adding a space or something in the code to force a re-compile and it works. Mostly just annoying.

1:     ^IRIS.Temp.Atelier("debug")    =    1
2:     ^IRIS.Temp.Atelier("debug",127434)    =    1
3:     ^IRIS.Temp.Atelier("debug",127434,1,0)    =    42
4:     ^IRIS.Temp.Atelier("debug",127434,1,1)    =    "Event:init|<init appid=""AtelierDebugger""      idekey=""Atelier""      session=""127434""      thread=""1""      parent=""IRIS for UNIX (Red Hat Enterprise Linux for x86-64) 2021.1 (Build 215U) Wed Jun 9 2021 09:48:12 EDT""      language=""COS""      protocol_version=""1.0""      fileuri=""file://"">    <engine version=""1.0"">%Atelier.XDebugAgent</engine>    <company>InterSystems Corporation</company>    <license>Copyright 2015 InterSystems Corporation</license>    <url>http://www.intersystems.com</url>    <copyright>Copyright 2015 InterSystems Corporation</copyright></init>"
5:     ^IRIS.Temp.Atelier("debug",127434,1,2)    =    "Received:feature_set -i 1 -n max_data -v 8192"
6:     ^IRIS.Temp.Atelier("debug",127434,1,3)    =    "Calling state feature_set"
7:     ^IRIS.Temp.Atelier("debug",127434,1,4)    =    "Event:feature_set|<response command='feature_set' feature='max_data' success='1' transaction_id='1'/>"
8:     ^IRIS.Temp.Atelier("debug",127434,1,5)    =    "Received:feature_set -i 2 -n max_children -v 32"
9:     ^IRIS.Temp.Atelier("debug",127434,1,6)    =    "Calling state feature_set"
10:     ^IRIS.Temp.Atelier("debug",127434,1,7)    =    "Event:feature_set|<response command='feature_set' feature='max_children' success='1' transaction_id='2'/>"
11:     ^IRIS.Temp.Atelier("debug",127434,1,8)    =    "Received:feature_set -i 3 -n max_depth -v 2"
12:     ^IRIS.Temp.Atelier("debug",127434,1,9)    =    "Calling state feature_set"
13:     ^IRIS.Temp.Atelier("debug",127434,1,10)    =    "Event:feature_set|<response command='feature_set' feature='max_depth' success='1' transaction_id='3'/>"
14:     ^IRIS.Temp.Atelier("debug",127434,1,11)    =    "Received:feature_set -i 4 -n notify_ok -v 1"
15:     ^IRIS.Temp.Atelier("debug",127434,1,12)    =    "Calling state feature_set"
16:     ^IRIS.Temp.Atelier("debug",127434,1,13)    =    "Event:feature_set|<response command='feature_set' feature='notify_ok' success='1' transaction_id='4'/>"
17:     ^IRIS.Temp.Atelier("debug",127434,1,14)    =    "Received:feature_set -i 5 -n debug_target -v_base64 VlVNQ1BSSU1BUlk6IyNjbGFzcyhWVU1DLlV0aWxpdHkuQ2VybmVyTGFiRnVuY3Rpb25zKS5WVU1DU2VsZWN0UGVyZm9ybWluZ0xhYkFyZWEoIk9SRDAwMDAzMTQiLCJFRFAiLCJTVCIp"
18:     ^IRIS.Temp.Atelier("debug",127434,1,15)    =    "Calling state feature_set"
19:     ^IRIS.Temp.Atelier("debug",127434,1,16)    =    "Launching: ##class(Custom.Utility.Functions).SelectArea(""arg1"",""arg2"",""arg3"")"
20:     ^IRIS.Temp.Atelier("debug",127434,1,17)    =    "PID 130498"
21:     ^IRIS.Temp.Atelier("debug",127434,1,18)    =    "Debug Device Name:|TCP|34811"
22:     ^IRIS.Temp.Atelier("debug",127434,1,19)    =    "Event:feature_set|<response command='feature_set' feature='debug_target' success='1' transaction_id='5'/>"
23:     ^IRIS.Temp.Atelier("debug",127434,1,20)    =    "Received:breakpoint_list -i 6"
24:     ^IRIS.Temp.Atelier("debug",127434,1,21)    =    "Calling state breakpoint_list"
25:     ^IRIS.Temp.Atelier("debug",127434,1,22)    =    "Event:breakpoint_list|<response command='breakpoint_list' transaction_id='6'></response>"
26:     ^IRIS.Temp.Atelier("debug",127434,1,23)    =    "Received:breakpoint_set -i 7 -t line -s enabled -f dbgp://|PRIMARY|Custom.Utility.Functions.cls -m SelectArea -n 1"
27:     ^IRIS.Temp.Atelier("debug",127434,1,24)    =    "Calling state breakpoint_set"
28:     ^IRIS.Temp.Atelier("debug",127434,1,25)    =    "mapping: PRIMARY:Custom.Utility.Functions.cls:SelectArea:1 -> :-1"
29:     ^IRIS.Temp.Atelier("debug",127434,1,26)    =    "Event:error|<response command='breakpoint_set' transaction_id='7'><error code='201'><message>Breakpoint Cannot Be Mapped</message></error></response>"
30:     ^IRIS.Temp.Atelier("debug",127434,1,27)    =    "Received:breakpoint_list -i 8"
31:     ^IRIS.Temp.Atelier("debug",127434,1,28)    =    "Calling state breakpoint_list"
32:     ^IRIS.Temp.Atelier("debug",127434,1,29)    =    "Event:breakpoint_list|<response command='breakpoint_list' transaction_id='8'></response>"
33:     ^IRIS.Temp.Atelier("debug",127434,1,30)    =    "Received:run -i 9"
34:     ^IRIS.Temp.Atelier("debug",127434,1,31)    =    "Calling state run"
35:     ^IRIS.Temp.Atelier("debug",127434,1,32)    =    "IsStopped"
36:     ^IRIS.Temp.Atelier("debug",127434,1,33)    =    "Location zDebugStub+40:%Debugger.System.1:0:0:0:0:6:0:0:0:0:0:PRIMARY"
37:     ^IRIS.Temp.Atelier("debug",127434,1,34)    =    "Stack 3^zDebugStub+40^%Debugger.System.1"
38:     ^IRIS.Temp.Atelier("debug",127434,1,35)    =    "Ran Off End"
39:     ^IRIS.Temp.Atelier("debug",127434,1,36)    =    "FlushOut"
40:     ^IRIS.Temp.Atelier("debug",127434,1,37)    =    "Timed out"
41:     ^IRIS.Temp.Atelier("debug",127434,1,38)    =    "IsStopped"
42:     ^IRIS.Temp.Atelier("debug",127434,1,39)    =    "Event:stop|<response command='run' status='stopped' reason='ok' transaction_id='9'/>"
43:     ^IRIS.Temp.Atelier("debug",127434,1,40)    =    "TidyUp: 1"
44:     ^IRIS.Temp.Atelier("debug",127434,1,41)    =    "Exiting"
45:     ^IRIS.Temp.Atelier("debug",127434,1,42)    =    "OnClose"

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