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For me, the best Python IDE I have used to date has been PyCharm.
For lighter weight project, I like Atom, but the frequency with with lightweight projects get heavy enough to require PyCharm is such that I've ended up just creating a "Hacks" project with multiple sub-projects for all those hacky little Python things I want to try out. PyCharm is great for that too because I can trivially create independent launch setups for every file in a project, even specifying different Python interpreters for each one.